Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq11853 129 7e-25 seq11103 102 9e-17 >seq11853 Length=150111 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||| | ||||||||| | Sbjct 133719 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 133778 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || || |||||||||||||||| Sbjct 133779 TCAGCCAAAAGATTGATGCAAAGGAGCCAGAAAAGAAGATTCCCTCTACTGCTGCAAAAG 133838 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 133839 CTACTACACGTTCTCC 133854 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||||||| |||| || || | | |||||||||||||||||| || ||||| || || Sbjct 135747 TCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGCA 135806 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || || ||||| | |||||||| ||||||||||| Sbjct 135807 ATCTGGAAGCCATAGAAACAACGCGCTTCTGTGATCTGTACTTC 135850 >seq11103 Length=185963 Score = 102 bits (112), Expect = 9e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||| || || | ||||| || || || | ||||||||||| ||||| || | Sbjct 141292 CCTCATCTCGGCTGATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCT 141351 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 141352 TCAGCCAAAATATAGCAGCAAAGGAACCGGAAAAGAAGATTCCTTCAACTGCAGCAAAGG 141411 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 141412 CAACCACTCTCTCACC 141427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561529026930960