Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq11249 111 1e-18 seq5265 95.1 1e-13 >seq11249 Length=37093 Score = 111 bits (122), Expect = 1e-18 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | |||||||| || ||||| || ||||| || || || ||||| Sbjct 18494 GTTACAAATGCGGTGGTCACTGTACCGGCCTATTTCAACGACTCTCAGCGCCAGGCTACA 18435 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || ||||||||| ||||| || || || || || || || |||||||| || |||||| Sbjct 18434 AAGGATGCTGGAACCATTGCAGGGCTCAACGTGCTCCGAATCATCAATGAGCCAACTGCT 18375 Query 550511 GCTGCACTTGCATATGGACTTGATAA 550536 ||||| |||||||||| || || || Sbjct 18374 GCTGCTATTGCATATGGTCTGGACAA 18349 >seq5265 Length=134520 Score = 95.1 bits (104), Expect = 1e-13 Identities = 352/550 (64%), Gaps = 10/550 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || ||||| ||| || || || || | || |||| ||| Sbjct 84398 GCGATCGGCATCGACTTGGGCACCACGTATTCCTGCGTGGGCGTCTTCCAGCATGGCAAA 84457 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || |||||||| || || || ||| | || || || ||||| | ||||| Sbjct 84458 GTGGAGATCATTGCCAACGACCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACC 84517 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || ||||| | | | || ||||| || || | |||| || || || ||||| Sbjct 84518 GATACTGAGCGCCTCATCGGCGATGCTGCCAAGAACCAAGTGGCTATGAACCCCACCAAC 84577 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || || ||||| || || | || || | | | | |||| | || || ||| || Sbjct 84578 ACCATCTTCGATGCCAAGCGCCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCA 84637 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-- 550289 ||||||||||| ||||| |||| | || |||| ||| || || | | ||| Sbjct 84638 GATATGAAGCACTGGCCCTTCCGTGTGGTGAATGAGAGTGGCAAGCCCAAGGTGCAAGTG 84697 Query 550290 --CTACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | | | || | || | ||||| | || || ||||| Sbjct 84698 GAATAC-----AAGGGTGAGATGAAGACCTTCTTTCCAGAGGAGATCAGCTCCATGGTCC 84752 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | || ||||| | | || |||| | || | | || | |||| || | Sbjct 84753 TTACCAAGATGAAGGAGATTGCTGAGGCTTACCTGGGCCGCAAGGTGCAGAATGCTGTTA 84812 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || ||||| || || |||||||| || || || || || ||||||||||| | Sbjct 84813 TCACAGTGCCAGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCA 84872 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | |||| |||||||| | || || ||||| || || || || ||||| | || |||| Sbjct 84873 TCACTGGCCTTAATGTGATGCGCATCATCAACGAGCCCACGGCAGCTGCCATAGCGTATG 84932 Query 550527 GACTTGATAA 550536 | | ||||| Sbjct 84933 GCTTGGATAA 84942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4024932287541860