Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq10844 113 8e-20 seq11103 87.8 3e-12 >seq10844 Length=18256 Score = 113 bits (124), Expect = 8e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 221731 CACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGT 221790 ||||||||||||| |||| |||| | |||||| || || |||||||||||||||||||| Sbjct 6804 CACCTCGTCCTTGCTGGTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGT 6863 Query 221791 CCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACC 221850 |||||||| | || || |||||| ||| | ||||||||||||||| |||| Sbjct 6864 CCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGT 6923 Query 221851 GCCAGTCTCC 221860 ||| |||||| Sbjct 6924 GCCCGTCTCC 6933 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || | || ||||||||| || |||||||| || || ||||| || Sbjct 8133 CTGGTTGGTTTCAACTCGCTTCATGAAGAGATCGGGGATCCAGAGGGCAAAGAAGAGGTC 8192 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| ||||||||||| || | || ||| | | || | ||| ||||||||||| Sbjct 8193 TCTGGCTCGCTGCTCCTCTTTCCCAGTATTCTTCTTTAAGTCAAGAAATTCAAAAATGTC 8252 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||||||||| || |||| ||| | || ||||||| || Sbjct 8253 CAAATGCCACGGCTCGAGGTAGATGGCAAAGGCCCCGGGTCTCT 8296 >seq11103 Length=185963 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||||||||| || || || ||||| || |||||| ||||| || || || | Sbjct 141417 TGGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTTCCGGTTCCTTTGCTGCTATATTTT 141358 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGG 26001 |||| ||| ||| || ||||| || ||| ||||| ||||| |||||||||||| | Sbjct 141357 GGCTGAAGAAGAGAGGCCTGATGCCTGGACTG-ACTTTCTCCAATGAGCTCATCAGCCGA 141299 Query 26002 GACGAGG 26008 || |||| Sbjct 141298 GATGAGG 141292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927886766252160