Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq32222 232 8e-56 seq5238 111 2e-19 >seq32222 Length=1043863 Score = 232 bits (256), Expect = 8e-56 Identities = 650/989 (66%), Gaps = 9/989 (1%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 ||||||| || ||| ||||| |||| ||||| || |||||| || ||||| ||| Sbjct 502855 TGTCGCAAATATTCTTCCAGGCATTTCACGGCAAAAGGGTCAACATCAGTATCGAACTTA 502796 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| ||| | || ||||||| || |||||| | || || | | Sbjct 502795 TTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCAGTTCAAGTCTCCTGCTCCAAAAATG 502739 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 |||||||| || | ||| | || |||| || ||||| | || ||||| | ||||||| Sbjct 502738 CAGACGGAGCGAACGTGAATCCCACTGCACGGTGGGTAGGGCGCACCTTTGGACACGTCA 502679 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 |||||| ||||||||||||||||||||||||| | ||| | |||||| || || | Sbjct 502678 CCTTCGAAGTACTGCCACTTCACAAACCTGGCGAGCGCGTTCATGTCAGAAACATCAAAC 502619 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 |||| | | ||| || || || || | || || | ||| | ||| |||||||| Sbjct 502618 TTGTTACTGGACGAAACTGCCCCTGGGACCTCAGGGATTCTCTGGATGGTTGCCCACAGA 502559 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCC 160406 | || || |||||||| ||||| || | ||| || || || ||| || | Sbjct 502558 TACTCATCAGGGCTGTAAGTGTCTTTTGCCCACTCGATAAATGAAAGAATTTTGCTATTT 502499 Query 160407 CGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATC 160466 | ||||| || | ||| | || ||||| || || || || || ||||| Sbjct 502498 TCTAATACGTGTTCTACAAAACTTCTACTAACAACAAAATAGGCACTACCAGAAAATATT 502439 Query 160467 GGTATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCAC 160525 || | | ||| || ||| | |||||| || ||||| || || | | Sbjct 502438 GGAGTACTGAGAGGTGGTCGT-TGTTTGTCTATGCCCGTGTTCTTTACTTTACCATCAAT 502380 Query 160526 CAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCG-GTGGCATGCGTTCCGTCTCTA 160584 | | | || |||| |||||||| | | |||| | | | ||||| |||||| || | Sbjct 502379 AATCTCATGGTGCTTTTTCCACCTTA-CTTCTTTGGAGAGAGGCATTTTTTCCGTTTCCA 502321 Query 160585 GACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCG 160644 || || |||| | || | ||||| | || || || || |||| ||||| || | Sbjct 502320 AGCTATTTTCACCCTTAAGGGCTTTCAACCTCTCTACTATTTCCTGGTTGGTCTTAAGAG 502261 Query 160645 GAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGT 160704 ||||||| | || || | |||||| | ||| ||||| || | ||| || || | Sbjct 502260 GAAAGTCCATGCCACAGAGGTTTATTAAGTATTTCCACTTTGTGCTTCTTCTGTAGAGAT 502201 Query 160705 CCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTA 160764 | ||||||| ||||| ||||| ||||| | |||||| || || || || || | || | Sbjct 502200 CTTTCATGCAGTTAATGTCTGCTTGCACCCTGCTCCATGAGGCATATACAACACTTTCCA 502141 Query 160765 GTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGA 160824 | || | | |||||| ||||| ||||| || || || ||| ||| | ||| || | Sbjct 502140 ACTGGCTAGAAATAAAGACATTATCAAAACAAGAAACTATCCCCTTCACAG-CAGCAAAA 502082 Query 160825 ACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATG 160883 | || | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 502081 AAGGATTCTGGGGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGAGCATAGATT 502022 Query 160884 GCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATC 160943 | || || | || || | |||||| || || |||| | ||| || ||||| || | Sbjct 502021 GATCTTAGGAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAAGT 501962 Query 160944 GGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAA 161003 ||||| || | || || || |||| | | | ||||| | ||||| |||| Sbjct 501961 GGAAATTCTGCTTCTTCATTGCTGAGGGGTTCCATGATATACTTCCTAGTCTTCGTAAAG 501902 Query 161004 TAATCACAATCCCGCGTCATGTTGATATA 161032 | |||| || |||||||| ||||| Sbjct 501901 GAGGCACAGTCTGTTGTCATGTTAATATA 501873 >seq5238 Length=836009 Score = 111 bits (122), Expect = 2e-19 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 160187 GCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTCGTAGTACTGCCACTT 160246 |||| |||| |||||||| | || || || | ||||||||| |||||||||||| Sbjct 524187 GCCGGTGCAGGGCGGGTAGGGGGCACCCTTGCTGATGTCACCTTCCAGGTACTGCCACTT 524246 Query 160247 CACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGG---GGAAC 160303 || | | ||| | || | |||||| ||| || | |||| | || || || Sbjct 524247 GACCAGGCGGGCCACAGCATTCATGTCCGAGAGCTCAAACTTGT---TGTGGTATGGCAC 524303 Query 160304 GGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTA 160363 ||| || || ||||| ||||| || | ||||||||||| | ||||||||| |||||||| Sbjct 524304 GGCCCCCGGCACGCCAGGCATGCGGTTGAGGGTGGCCCAGACGTGTTCGTCAGGGCTGTA 524363 Query 160364 CGTGTCCTTAGACCATTCCATGAACT 160389 |||||||||| ||| || | ||||| Sbjct 524364 GGTGTCCTTAGCCCACTCAAGGAACT 524389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576623841686640