Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5929 167 3e-35 seq12519 161 1e-33 seq10431 161 1e-33 seq230 158 1e-32 seq3868 150 2e-30 seq10844 127 2e-23 seq11853 107 2e-17 seq21182 89.7 6e-12 seq10446 89.7 6e-12 >seq5929 Length=56348 Score = 167 bits (184), Expect = 3e-35 Identities = 158/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| ||||| |||||||||||||| |||| | || Sbjct 11737 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACCGCGGTCTGGATCTCCCGCGAGGTGA 11796 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 11797 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 11856 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 11857 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 11916 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 11917 GCACCTGCTTCAGCACCTTGTA 11938 >seq12519 Length=28616 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || || |||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 16442 GCTTGCCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 16383 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 16382 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 16323 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 16322 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 16263 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 16262 GCACCTGCTTCAGCACCTTGTA 16241 >seq10431 Length=40340 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 5822 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 5763 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 5762 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 5703 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 5702 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 5643 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 5642 GCACCTGCTTCAGCACCTTGTA 5621 >seq230 Length=27797 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 8309 GCTTGGCCAACTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 8368 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 8369 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 8428 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || |||||||||| ||| | |||| ||||||||| ||| |||| Sbjct 8429 TGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGT 8488 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 8489 GCACCTGCTTCAGCACCTTGTA 8510 >seq3868 Length=532548 Score = 150 bits (166), Expect = 2e-30 Identities = 157/204 (77%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | ||| |||||||| ||||||||||| |||| || Sbjct 4352 GCTTGGCCAGCTCGCCGGGCAGCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGA 4293 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 4292 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGA 4233 Query 1254463 TGTCGTTGACAAACGAGTTCATGA--CCGACATCGACTTGTTGGAGATGCCCACGTCGGG 1254520 | ||||| || || |||||||||| ||| | | |||| ||||||||| ||| || Sbjct 4232 TTTCGTTCACGAAGGAGTTCATGATGCCGC--TGGCCTTGGACGAGATGCCCGTGTCCGG 4175 Query 1254521 GTGCACCTGCTTGAGCACCTTGTA 1254544 |||||||||||| ||||||||||| Sbjct 4174 GTGCACCTGCTTCAGCACCTTGTA 4151 >seq10844 Length=18256 Score = 127 bits (140), Expect = 2e-23 Identities = 112/140 (80%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 1630138 CCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCC 1630197 ||||| | |||| ||| | |||||| | | | |||||| ||||||||| || || Sbjct 9823 CCCGCGATGTAGCTGCCCGTGGCGCGGATGCAGCTCACGGCAAGGCCGATGCCCCCCGCG 9882 Query 1630198 GACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGGCC 1630257 ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| || Sbjct 9883 GACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCC 9942 Query 1630258 TTCATGTCCACGAGAAAGCA 1630277 |||||| || || ||||| Sbjct 9943 TTCATGCACAGCAGGAAGCA 9962 Score = 107 bits (118), Expect = 2e-17 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||| |||||||||||| || | | || |||||||||||||||||| | | Sbjct 6829 ACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTCCCCAGGTTCTGCTGGTTGCTCTTG 6888 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| || |||||||| |||||||||||| | ||| ||||| |||||| | ||| | Sbjct 6889 CGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCCGTCTCCGTCTGCGACTCGATG 6948 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 || || |||| | ||| | || ||| || ||| ||||||||| Sbjct 6949 ATCGCGTACCACAGCTGCTGGGCCTTCACCACGCGGCGCACGCGGCCCT 6997 >seq11853 Length=150111 Score = 107 bits (118), Expect = 2e-17 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 |||||||||||||||||||| |||||||||||||| |||||||||| ||| || | || Sbjct 136641 CACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCACACGTCGTG 136700 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||||| ||| ||||| ||||| || |||| ||| || || Sbjct 136701 GTACTGGATGGGGAAGATGACGAAGCGACGCGGGTTCTCCCGCAGCAGCGGCTC 136754 >seq21182 Length=239 Score = 89.7 bits (98), Expect = 6e-12 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431 |||||| |||||||| || ||||||| ||| |||||||||| |||||| || || Sbjct 224 CTGGTAGTCGGTGCCCCGGACAAACTTGAGCTTCTCCAGCGGCACTCCGATGCTCTCCAG 165 Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491 |||||||||||| | |||||| ||||| || | || | ||| ||||| || | Sbjct 164 CATGGCCTTGATCACGTTCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCAGGGGGC 105 Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACC 1852540 ||| |||||| |||| || || | || || ||||| ||| | ||| Sbjct 104 CTTCATGTTGTCTAGGTAAGCATGGAGATCAGCGAAGAGAATCGTCACC 56 >seq10446 Length=30794 Score = 89.7 bits (98), Expect = 6e-12 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431 |||||| |||||||| || ||||||| ||| |||||||||| |||||| || || Sbjct 25333 CTGGTAGTCGGTGCCCCGGACAAACTTGAGCTTCTCCAGCGGCACTCCGATGCTCTCCAG 25274 Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491 |||||||||||| | |||||| ||||| || | || | ||| ||||| || | Sbjct 25273 CATGGCCTTGATCACGTTCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCAGGGGGC 25214 Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCTTGACC 1852540 ||| |||||| |||| || || | || || ||||| ||| | ||| Sbjct 25213 CTTCATGTTGTCTAGGTAAGCATGGAGATCAGCGAAGAGAATCGTCACC 25165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6100367714746938