Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5912 122 8e-23 seq8606 118 1e-21 >seq5912 Length=13300 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || || ||||| || ||| Sbjct 8885 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAAACCATCACCCTGGAAGTTGAGCCCAGT 8826 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||||| || ||||| || || || ||||| Sbjct 8825 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATCCCCCCAGATCAG 8766 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||||||| | | | |||| || || ||| Sbjct 8765 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCTGACTACAAC 8706 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| ||||| |||| Sbjct 8705 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCG 8671 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || ||||| || || || ||||| || ||| Sbjct 9113 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAAACCATCACCCTGGAAGTTGAGCCCAGT 9054 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || || || ||||| || || || ||||| Sbjct 9053 GACACCATTGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGCATCCCCCCAGATCAG 8994 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||||||| | | | |||| || || || Sbjct 8993 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCCGACTACAAT 8934 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||| ||||| |||| || | || ||| Sbjct 8933 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGGC 8886 >seq8606 Length=302679 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || || || || || | | | Sbjct 263176 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTCGAGCCTAGC 263235 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || |||||||| ||||| ||||| || || || ||||| Sbjct 263236 GACACTATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCCGGATCAG 263295 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| || | | | |||| || || ||| Sbjct 263296 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGACTACAAC 263355 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || |||||||| || || ||| ||||| |||| Sbjct 263356 ATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCG 263390 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || ||| ||| Sbjct 263403 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAG 263462 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 263463 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCA 263522 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | |||| || || || Sbjct 263523 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCCGACTACAA 263582 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || |||||||| || || ||| ||||| |||| Sbjct 263583 CATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCG 263618 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || ||| ||| Sbjct 263631 GATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAACCCAG 263690 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 263691 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCA 263750 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | |||||||||| || || |||||||| ||| | | | |||| || || || Sbjct 263751 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAA 263810 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || |||||||| || || ||| | ||| |||| || | || ||| Sbjct 263811 CATCCAGAAGGAATCCACCCTGCACCTCGTGCTGCGCCTGAGGGGTGGC 263859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449433564367920