Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5929 219 7e-51 seq12519 210 3e-48 seq10431 210 3e-48 seq230 206 4e-47 seq3868 197 2e-44 seq476 143 4e-28 seq10844 118 2e-20 seq11853 116 6e-20 >seq5929 Length=56348 Score = 219 bits (242), Expect = 7e-51 Identities = 202/256 (79%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| |||||| ||| Sbjct 11698 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCGCCGGGCA 11757 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| ||||| |||||||||||||| || | | ||| ||| ||||||||| | Sbjct 11758 GCAGCAGCCGCACCGCGGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 11817 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 11818 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 11877 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 11878 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 11937 Query 1485710 AAACAAAGGACGAGTA 1485725 | || || |||||| Sbjct 11938 ACACGTAGATCGAGTA 11953 >seq12519 Length=28616 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| || |||| |||||| ||| Sbjct 16481 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGCCCAGCTCGCCGGGCA 16422 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 16421 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 16362 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 16361 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 16302 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| |||||||||||||||||| |||||||||| Sbjct 16301 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 16242 Query 1485710 AAAC 1485713 | || Sbjct 16241 ACAC 16238 >seq10431 Length=40340 Score = 210 bits (232), Expect = 3e-48 Identities = 193/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 5861 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 5802 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 5801 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 5742 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 5741 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 5682 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 5681 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 5622 Query 1485710 AAAC 1485713 | || Sbjct 5621 ACAC 5618 >seq230 Length=27797 Score = 206 bits (228), Expect = 4e-47 Identities = 192/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| |||||| |||||| ||| Sbjct 8270 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAACTCGCCGGGCA 8329 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 8330 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 8389 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| |||||||| || || ||||||| Sbjct 8390 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCA 8449 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 8450 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 8509 Query 1485710 AAAC 1485713 | || Sbjct 8510 ACAC 8513 >seq3868 Length=532548 Score = 197 bits (218), Expect = 2e-44 Identities = 190/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| |||||||||||| ||||||| |||||| ||| Sbjct 4391 TGTACTTGGTGACAGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCGGGCA 4332 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| |||||||| ||||||||||| || | ||| ||| ||||||||| | Sbjct 4331 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 4272 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| | ||||||| |||| || ||||| || || ||||||| Sbjct 4271 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATTTCGTTCACGAAGGAGTTCA 4212 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| | | ||| ||||||||| ||| |||||||||||||| |||||||||| Sbjct 4211 TGATGCCGCTGGCCTTGGACGAGATGCCCGTGTCCGGGTGCACCTGCTTCAGCACCTTGT 4152 Query 1485710 AAAC 1485713 | || Sbjct 4151 ACAC 4148 >seq476 Length=41894 Score = 143 bits (158), Expect = 4e-28 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| ||||| || ||| ||||||| || || ||| Sbjct 30648 TGTACTTGGTGACAGCCTTGGTGCCCTCCGAGACCGCATGCTTGGCCAGCTCCCCCGGCA 30589 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || ||||| || ||||| | ||| ||| || ||| ||| ||| | ||| | Sbjct 30588 GCAGGAGCCGCACCGCCGTCTGCACCTCACGGCTGGTGATGGTGGAGCGGTGGTTGTAGT 30529 Query 1485590 GCGCCAGGCGGCCGGCCTCGG-TGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||||||| |||||| | |||| | ||| || | ||||| |||||||| |||||| Sbjct 30528 GGGCCAGGCGGGAGGCCTCTGCTGCC-AGGCGCTCAAAGATGTCATTGACAAAGGAGTTC 30470 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696 ||||| ||| | ||| ||||||||| ||| || ||||||||| Sbjct 30469 ATGATGCTCATGGCCTTGGAGGAGATGCCAGTGTCAGGATGCACCTGC 30422 >seq10844 Length=18256 Score = 118 bits (130), Expect = 2e-20 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 2073613 CCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCC 2073672 ||||| | |||| ||||| |||||| | | | |||||| ||||||||| || || Sbjct 9823 CCCGCGATGTAGCTGCCCGTGGCGCGGATGCAGCTCACGGCAAGGCCGATGCCCCCCGCG 9882 Query 2073673 GCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGATCGAGTCGGCC 2073732 | |||||||||||||||||||| || ||||| ||||||||||||||||| |||| || Sbjct 9883 GACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAGATGCCCTCGATGCTGTCGTCC 9942 Query 2073733 TTCATGTCCAACAGAAAGCA 2073752 |||||| || ||| ||||| Sbjct 9943 TTCATGCACAGCAGGAAGCA 9962 Score = 96.9 bits (106), Expect = 5e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| ||| |||||||||||| || | |||| |||||||||||||||||||| | Sbjct 6829 ACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTCCCCAGGTTCTGCTGGTTGCTCTTG 6888 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 ||||| || |||||||| ||||||||||| | |||||||| |||||| | || | Sbjct 6889 CGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCCGTCTCCGTCTGCGACTCGATG 6948 Query 2071699 ATGGCCGACCA 2071709 || || |||| Sbjct 6949 ATCGCGTACCA 6959 >seq11853 Length=150111 Score = 116 bits (128), Expect = 6e-20 Identities = 96/115 (83%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGT--T 796360 ||||||||||||||||| ||||||||||||||||| |||||||||| ||| | ||| | Sbjct 136642 ACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCACA--CGTCGT 136699 Query 796361 GGTAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||| |||||||||| | || |||||| |||||||| || ||||||||||| Sbjct 136700 GGTACTGGATGGGGAAGATGACGAAGCGACGCGGGTTCTCCCGCAGCAGCGGCTC 136754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7907469009473646