Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq5912 138 7e-28 seq8606 129 4e-25 >seq5912 Length=13300 Score = 138 bits (152), Expect = 7e-28 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || || ||||||| | ||| |||||||| | |||| ||||||||| ||||| ||||| Sbjct 8656 TTACCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 8715 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| |||| |||| ||||| ||||| || || |||||||| | ||||| ||| | Sbjct 8716 GACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGG 8775 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || ||||| || | || || || ||| | || | ||| ||| ||| Sbjct 8776 GGGATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCA 8835 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||| ||||| || || || |||||||| ||||||||||||||| Sbjct 8836 ACTTCCAGGGTGATGGTTTTCCCTGTCAGGGTCTTCACAAAGATCTGCATG 8886 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||| |||||||| | |||| ||||||||| || || ||||| || Sbjct 8887 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 8946 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || ||||||||||| | ||||| ||| | || Sbjct 8947 AGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGG 9006 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || || || ||| | || | ||| ||| ||| || Sbjct 9007 ATGCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACT 9066 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| ||||| || || || |||||||| ||||||||||||||| Sbjct 9067 TCCAGGGTGATGGTTTTCCCTGTCAGGGTCTTCACAAAGATCTGCATG 9114 >seq8606 Length=302679 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| |||||||| | |||| |||||||| ||||| ||||| || Sbjct 263630 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 263571 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | ||||| || | || Sbjct 263570 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 263511 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || || || || || || || | ||| ||| || | Sbjct 263510 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGTTCAA 263453 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 263452 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 263404 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||| || ||||| | |||| |||||||| ||||| ||||| || Sbjct 263858 CCACCCCTCAGGCGCAGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 263799 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | ||||| || | || Sbjct 263798 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 263739 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || || || || || || || | ||| ||| || | Sbjct 263738 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGTTCAA 263681 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| |||||||||||||| Sbjct 263680 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 263632 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| |||||||| | |||| |||||||| ||||| ||||| || Sbjct 263402 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 263343 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| | || ||||| ||||| || || |||||||| | ||||| || | || Sbjct 263342 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 263283 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || || || | | || | || | | |||||| Sbjct 263282 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCGCTAGGCTCGACC 263223 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || |||||||| || || |||||||| ||||||||||||||| Sbjct 263222 TCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATG 263175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325365270496166