Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5912 98.7 8e-16 seq8606 93.3 3e-14 >seq5912 Length=13300 Score = 98.7 bits (108), Expect = 8e-16 Identities = 154/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| |||||||| || ||||| ||||| || ||||| ||| | || ||| || Sbjct 9344 AAAATGCAGATTTTTGTGAAGACTTTGACAGGGAAGACCATCACCTTGGAGGTTGAGCCT 9285 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 | || || | | | || || ||||| ||||| ||||| | ||| ||| Sbjct 9284 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGAT 9225 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGA 107728 |||||||| || || | ||| || || |||||||| |||||| || || | || Sbjct 9224 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGC----ACCCTGTCCGA 9169 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||| || |||||||| || ||||| ||||| || Sbjct 9168 CTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 9129 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | ||||| |||||||| ||| | ||| ||| | | Sbjct 8885 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAAACCATCACCCTGGAAGTTGAGCCCAGT 8826 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || ||||| ||||| |||||| | ||| |||||| Sbjct 8825 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATCCCCCCAGATCAG 8766 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||||||||| | || || | ||||||||| Sbjct 8765 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCTGACTACAAC 8706 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||| || ||||| ||||| || Sbjct 8705 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 8673 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | ||||| |||||||| ||| | ||| ||| | | Sbjct 9113 ATGCAGATCTTTGTGAAGACCCTGACAGGGAAAACCATCACCCTGGAAGTTGAGCCCAGT 9054 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || |||||| ||||| |||||| | ||| |||||| Sbjct 9053 GACACCATTGAGAACGTGAAGGCCAAGATTCAGGATAAGGAAGGCATCCCCCCAGATCAG 8994 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || ||||||||||| | || || | |||||||| Sbjct 8993 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGACGCACCCTGTCCGACTACAAT 8934 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||| || ||||| ||||| || Sbjct 8933 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 8901 >seq8606 Length=302679 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 107549 GTTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGA 107608 ||| || ||||| || ||||| || || | || ||||| ||||| || | || || Sbjct 263169 GTTCAACATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACTCTTGAGGTCGA 263228 Query 107609 GGCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 | || |||| ||| | | | || || ||||| || || |||||| | ||| Sbjct 263229 GCCTAGCGACACTATTGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCCCC 263288 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 |||||||||||| || || | ||| || || |||||||| |||| || || | || Sbjct 263289 GGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGA 263348 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAggggg 107782 ||||||||| || ||||| || || ||||| ||||| || | || |||| || Sbjct 263349 CTACAACATCCAGAAGGAATCCACCCTGCACCTGGTGCTGCGTCTGAGAGGTGG 263402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398475673784146