Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq11249 102 6e-16 seq2848 93.3 3e-13 >seq11249 Length=37093 Score = 102 bits (112), Expect = 6e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||||||||||| | |||| |||| | || || || |||||||||| Sbjct 19277 CAAAGACTGTGTTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCGTCTCCAATCAACC 19336 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 ||||| ||||| || | ||| || ||| || || |||||||| || ||||| |||| Sbjct 19337 TCTCTGTGTCTGTGAAGGCAACGTAGCTTGGGGTGGTCCGATTACCCTGGTCATTGGCAA 19396 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| || || |||| ||| | ||||| ||||| | | || || || | ||||| Sbjct 19397 TGATTTCCACCTTCCCATGTTGGAACACACCAACACAGGAATAGGTGGTGCCAAGATCAA 19456 Query 282870 TACC 282873 | || Sbjct 19457 TTCC 19460 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| |||| ||||||||||||||| ||||| || |||| | || Sbjct 18346 TTCTTGTCCAGACCATATGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGGAGCACG 18405 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| |||| ||||| || || || || | || || ||||| ||||| Sbjct 18406 TTGAGCCCTGCAATGGTTCCAGCATCCTTTGTAGCCTGGCGCTGAGAGTCGTTGAAATAG 18465 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || || ||||| | || |||| ||| || Sbjct 18466 GCCGGTACAGTGACCACCGCATTTGTAAC 18494 >seq2848 Length=160031 Score = 93.3 bits (102), Expect = 3e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| ||||| ||| | ||||| || ||||| || |||||| | ||| | | ||||| Sbjct 65273 TGTTGTAGCTACAGTGGCATTCGGAATGGGCATCAATAAAGCAGATATCCGGAAGGTTAT 65332 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || || ||| | || ||| ||||| ||||||||||| ||||| ||||| Sbjct 65333 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTACCAAGAAATTGGGAGAGCCGGTCG 65392 Query 131296 TGATGG 131301 |||||| Sbjct 65393 TGATGG 65398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3736579311304164