Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5912 138 1e-27 seq8606 125 7e-24 seq10844 84.2 2e-11 >seq5912 Length=13300 Score = 138 bits (152), Expect = 1e-27 Identities = 152/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| |||||||| ||| || ||| | | | ||||| |||||||||| Sbjct 8916 GGTGGACTCCTTCTGGATATTGTAGTCGGACAGGGTGCGTCCA-TCCTCCAGCTGCTTGC 8974 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| |||||| || || |||||||||||||| || ||||| || Sbjct 8975 CAGCGAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGAATCTTGGCCT 9034 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || || | ||||| |||||| || ||||| | Sbjct 9035 TCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTTTTCCCTGTCAGGG 9094 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 9095 TCTTCACAAAGATCTGCATG 9114 Score = 129 bits (142), Expect = 6e-25 Identities = 150/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | ||||| |||||||||| Sbjct 8688 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCCTCCAGCTGCTTGC 8746 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || |||||||||||||| || |||||| || Sbjct 8747 CAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCTTGGATCTTGGCCT 8806 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || || | ||||| |||||| || ||||| | Sbjct 8807 TCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTTTTCCCTGTCAGGG 8866 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 8867 TCTTCACAAAGATCTGCATG 8886 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 9144 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGC 9202 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || ||||| |||||||| || |||||| || Sbjct 9203 CAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGGATCTTGGCCT 9262 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| | ||||| || || | ||||| ||| || || |||| || Sbjct 9263 TGACATTCTCAATGGTGTCACTAGGCTCAACCTCCAAGGTGATGGTCTTCCCTGTCAAAG 9322 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 9323 TCTTCACAAAAATCTGCAT 9341 >seq8606 Length=302679 Score = 125 bits (138), Expect = 7e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| || ||||| || ||||| ||| || ||| ||| || ||||||||||| Sbjct 263373 GGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCC 263314 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| || || ||||||||||||||||| |||||| ||| Sbjct 263313 AGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTT 263254 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| |||||| | ||||| || || | |||| ||| ||||||||||| || Sbjct 263253 CACATTTTCAATAGTGTCGCTAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGGGT 263194 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 263193 CTTCACAAAGATCTGCATG 263175 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 263601 GGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGC 263543 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || |||||||| |||||||| |||||| || Sbjct 263542 CAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCT 263483 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||| || || || | ||||| ||| ||||| ||||| | Sbjct 263482 TCACATTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 263423 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 263422 TCTTCACAAAGATCTGCAT 263404 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||| || ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 263829 GGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGC 263771 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||| || || |||||||| |||||||| |||||| || Sbjct 263770 CAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCT 263711 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||| || || || | ||||| ||| ||||| ||||| | Sbjct 263710 TCACATTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 263651 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 263650 TCTTCACAAAGATCTGCAT 263632 >seq10844 Length=18256 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 149420 GCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCC 149479 ||||||||| || || |||| |||||| |||||| | |||||| ||||||||| Sbjct 9867 GCCGATGCCCCCCGCGGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAGATGCC 9926 Query 149480 CTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCA 149515 ||||||||||||| ||||||| |||||| ||||| Sbjct 9927 CTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 9962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482922187701360