Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq32222 163 3e-35 seq669 123 3e-23 seq5238 105 8e-18 >seq32222 Length=1043863 Score = 163 bits (180), Expect = 3e-35 Identities = 601/929 (65%), Gaps = 27/929 (3%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 |||||||| | ||| || || || || | || || || ||| || ||||||| Sbjct 502858 TTATGTCGCAAATATTCTTCCAGGCATTTCACGGCAAAAGGGTCAACATCAGTATCGAAC 502799 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || || | ||| || ||| || ||||| || | || || | ||| || Sbjct 502798 TTATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCAGTTCAAGTCTCCTGCTCCAAAA 502742 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | ||| ||||| || ||||| | || |||||||| || || | || || | | ||| Sbjct 502741 ATGCAGACGGAGCGAACGTGAATCCCACTGCACGGTGGGTAGGGCGCACCTTTGGACACG 502682 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || || ||| |||| |||||||| || ||||| | || || | |||||| || || Sbjct 502681 TCACCTTCGAAGTACTGCCACTTCACAAACCTGGCGAGCGCGTTCATGTCAGAAACATCA 502622 Query 162307 TACTTGTACACTG-ACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 |||||| |||| ||| || || || || || | || | |||||| | || ||||| Sbjct 502621 AACTTGTT-ACTGGACGAAACTGCCCCTGGGACCTCAGGGATTCTCTGGATGGTTGCCCA 502563 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCG---T 162422 ||| | || || || || || || || || | |||||| || || ||| | | Sbjct 502562 CAGATACTCATCAGGGCTGTAAGTGTCTTTTGCCCACTCGATAAA-----TGAAAGAATT 502508 Query 162423 TT--TATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCA 162480 || ||| | || | || || | || | |||| ||| || || |||||| Sbjct 502507 TTGCTATTTTCTAATACGTGTTCTACAAAACTTCTACTAACAACAAAATAGGCACTACCA 502448 Query 162481 GAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATT 162540 ||||| | || | | | ||| || | | ||||||| |||||||| ||| | Sbjct 502447 GAAAATATTGGAGTACTGAGAGGTGGTCGTTGTTTGTCTATGCCCGTGTTCTTTACTTTA 502388 Query 162541 CCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG----TG 162596 || || | | | | || ||| ||||||| | |||| ||| ||| || | Sbjct 502387 CCATCAATAATCTCATGGTGCTTTTTCCACCTTACT-TCTT--TGG-AGAGAGGCATTTT 502332 Query 162597 TTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATT 162656 ||| || || | || || |||| | ||| |||| | || || || | || Sbjct 502331 TTCCGTTTCCAAGCTATTTTCACCCTTAAGGGCTTTCAACCTCTCTACTATTTCCTGGTT 502272 Query 162657 GGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAG 162716 ||||||||| |||||||| |||| ||||| || || | ||||||||||| ||| Sbjct 502271 GGTCTTAAGAGGAAAGTCCATGCCACAGAGGTTTATTAAGTATTTCCACTTTGTGCTTCT 502212 Query 162717 TCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACAC 162776 || ||| ||||| | | ||||| | || || || || | ||||| || || || || Sbjct 502211 TCTGTAGAGATCTTTCATGCAGTTAATGTCTGCTTGCACCCTGCTCCATGAGGCATATAC 502152 Query 162777 GACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCAC 162836 || || |||||| | | | ||||||||| || ||||| |||||||||||| |||| Sbjct 502151 AACACTTTCCAACTGGCTAGAAATAAAGACATTATCAAAACAAGAAACTATCCCCTTCAC 502092 Query 162837 GGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGA 162894 | ||| | || || | |||| | || || || | |||||| | ||||||| Sbjct 502091 AG-CAGCAAAAAAGGATTCTGGGGACTTT-TTGTCAACATGAATGCAGTAAAAATTCTGA 502034 Query 162895 GGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATA 162954 || || ||||| | || || | ||| || | |||||| || || || | ||||| || Sbjct 502033 GGAGCATAGATTGATCTTAGGAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATT 501974 Query 162955 GAATACGCTATGGGGAACTCAGCCTCCTC 162983 || || || | || || || || || || Sbjct 501973 GAGTAAGCAAGTGGAAATTCTGCTTCTTC 501945 >seq669 Length=341061 Score = 123 bits (136), Expect = 3e-23 Identities = 398/606 (66%), Gaps = 19/606 (3%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | | || | ||| || ||||||| |||| | || | |||| Sbjct 209861 GCCAGCTCTCTTGGGGAGAGGAAATCTTCCACATGTATGAAAGAGTCTGCTGGAATGTAA 209920 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || || || ||||| || | || ||||| | ||||| | || |||| ||||| Sbjct 209921 TTCTCATAGTTTTCTCTGGAAGGGCCCAGTACAACTGGTACTGATCCAGCCAGAAGAGCA 209980 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || |||||||| || |||| | || || ||||| | || |||||| Sbjct 209981 TTGTAAAGTTTCTCAGTAATATAATCTTTGTGGATTGAATTTTCAAATGAAAGGTAGAAT 210040 Query 177126 TTACA---GGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACG 177182 ||||| |||| ||||| || || |||| | ||| | || ||||| | | Sbjct 210041 TTACAAGTGGAA-ATAGT--TGGAATCAAGTTTTTATCATTGACGTAGTCTCCAAAGGCT 210097 Query 177183 TTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCAC 177241 | || || ||| || || |||| ||| || ||||| ||| || || || || | Sbjct 210098 TGTCCATACGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGC 210156 Query 177242 GTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGG 177300 || || |||||| || || || ||||| || || || || ||||| | || || Sbjct 210157 ATGCTCAGGGTTCCAGTTACTTACCACCCAACAGACCAAGTT-TTCTTTACTTGGTAC-- 210213 Query 177301 GATTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCC 177359 ||| | ||| | | | | | | | | | | ||||| ||||| |||||||| Sbjct 210214 --TTCAAAGGTAAAGGAACTTGTACCAACCATCATGAAACCATAAGGCACCTGAATATCT 210271 Query 177360 GAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGG 177417 || ||||| | || || | || || || || || | ||| || | ||| |||| | Sbjct 210272 GAATCGCGCCGATAAGTCAGGGTCAGGTTAAAGAGATGTTCAATGCCACTTTTTTG--TG 210329 Query 177418 GGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTT 177477 | | | | | || || || || |||||||| ||||| || || || | ||| |||| | Sbjct 210330 GAGTATGAGTTGGAGACTCCAAATTCATCCAAATCCATTTCTGGAATGGTGGCCTGGCCT 210389 Query 177478 CCGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGG 177537 | ||||| | || | |||| || || || ||||| |||| || ||||| | || Sbjct 210390 GCTGAGGTAAATTAGTAAGATCCCAGCTGATGTCCCTGTGATGAATGAGAACGGCGTGGG 210449 Query 177538 CTTTGT 177543 ||||| Sbjct 210450 ATTTGT 210455 >seq5238 Length=836009 Score = 105 bits (116), Expect = 8e-18 Identities = 180/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 162723 CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCT 162782 ||| ||||| | |||||||| || ||||| | || ||| || || || || || | Sbjct 524697 CAGGTCCTGCATGCAGTTCAGGTCAGCCTGCAGCCGGGACCAGGAGGCATAGACCACATT 524756 Query 162783 CTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAG 162842 ||||| | | |||| |||||||||||| ||| || | | || | ||||||| Sbjct 524757 CTCCAGGCGACTGGCCACAAAGACATTGGGGAAGCAGGCGGCGATGGCTCGCACGGCCTC 524816 Query 162843 TGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTA 162902 ||| | | || || || || || || | |||||| || ||||| |||||||| Sbjct 524817 CTGGAAGGTGGCTGTCGACTTGCTGTCAACATGGATGCAGTAGAGGTTCTGGGGGGCGTA 524876 Query 162903 GATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGC 162962 || || | ||| | | ||| |||||||| || || | ||| | || || || || || Sbjct 524877 GAGGGATCGCAGGAGCCGCTCAAACATCTCAATTTTGTCGTGGATGACCATGGAGTAGGC 524936 Query 162963 TATGGGGAACTCAGCCTCCTC 162983 |||||||||||||||||||| Sbjct 524937 GATGGGGAACTCAGCCTCCTC 524957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577835390774400