Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq8606 113 3e-20 seq5912 100 2e-16 >seq8606 Length=302679 Score = 113 bits (124), Expect = 3e-20 Identities = 167/233 (72%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | ||||| || || ||| || || || |||||||| ||||| Sbjct 263402 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 263343 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| |||| || || || ||||| |||| | ||||||||| | || Sbjct 263342 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 263283 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| ||| ||| |||||||| | || || Sbjct 263282 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTTTCAATAGTGTCGCTAGGCTCGAC 263224 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 |||| ||||| || || || || | || || |||||||||||||| |||| Sbjct 263223 CTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT-GTTG 263172 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||||| ||| | ||||| || || ||| || || || |||||||| ||||| Sbjct 263630 CCACCTCTCAGACGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGAC 263571 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| || || || ||||| |||| | ||||||||| | || Sbjct 263570 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 263511 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || || |||| ||| ||| |||||| || | ||| || Sbjct 263510 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCACTGGGTTCAAC 263452 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 263451 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 263404 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||| | || || ||| || || || |||||||| || || Sbjct 263858 CCACCCCTCAGGCGCAGCACGAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 263799 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| || || || ||||| |||| | ||||||||| | || Sbjct 263798 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGG 263739 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || || |||| ||| ||| |||||| || | ||| || Sbjct 263738 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CATTCTCAATGGTGTCACTGGGTTCAAC 263680 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 263679 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 263632 >seq5912 Length=13300 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33519 GTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATC 33578 || |||||| |||| || | ||||| || || ||| ||| || || |||||||| || Sbjct 8655 GTTACCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTC 8714 Query 33579 GGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTG 33638 || || |||||| | || |||| || || || ||||| |||| | |||||||||| | Sbjct 8715 AGACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGG 8774 Query 33639 CGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATT 33697 || | ||||| || || || || |||| | | ||| |||||| || | | Sbjct 8775 GGGGATGCCTTCCTTATCTTGGATCTTGGCCTTCA-CGTTCTCAATGGTGTCACTGGGCT 8833 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | ||||| ||||| ||||| | || || |||||||||||||| Sbjct 8834 CAACTTCCAGGGTGATGGTTTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 8885 Score = 98.7 bits (108), Expect = 7e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||||| || || ||| ||| || || || ||||| ||||| Sbjct 8887 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGGAC 8946 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| | || |||| || || || || || |||| | |||||||||| | || Sbjct 8947 AGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGGGG 9006 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||||| || || ||| || |||| | | ||| |||||| || | || || Sbjct 9007 ATGCCTTCCTTATCCTGAATCTTGGCCTTCA-CGTTCTCAATGGTGTCACTGGGCTCAAC 9065 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| ||||| | || || |||||||||||||| Sbjct 9066 TTCCAGGGTGATGGTTTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 9113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328373442314880