Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq10222 109 2e-20 seq9963 109 2e-20 seq6301 109 2e-20 seq3352 100 9e-18 seq12887 98.7 3e-17 seq5912 98.7 3e-17 seq5926 95.1 4e-16 seq15683 78.8 3e-11 >seq10222 Length=12507 Score = 109 bits (120), Expect = 2e-20 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 486 GGCCGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 427 Query 2828 CCCGGGCTTCAGC 2840 |||||||||| || Sbjct 426 CCCGGGCTTCGGC 414 >seq9963 Length=2833 Score = 109 bits (120), Expect = 2e-20 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 1952 GGCCGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 1893 Query 2828 CCCGGGCTTCAGC 2840 |||||||||| || Sbjct 1892 CCCGGGCTTCGGC 1880 >seq6301 Length=22106 Score = 109 bits (120), Expect = 2e-20 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 3706 GGCCGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 3647 Query 2828 CCCGGGCTTCAGC 2840 |||||||||| || Sbjct 3646 CCCGGGCTTCGGC 3634 >seq3352 Length=9313 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 5014 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 5073 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 5074 CCCGGGTTTCGGC 5086 >seq12887 Length=115691 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 55521 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 55580 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 55581 CCGGGTTTCGGC 55592 >seq5912 Length=13300 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 13030 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 12971 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 12970 CCGGGTTTCGGC 12959 >seq5926 Length=342244 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||| |||||| ||||||||||| |||||||||||||||||||| | Sbjct 106821 GCTGAAATAGCTCAGTTTGGAGAGTGTTAGACTGAAGCTCTAAAGGTCCCTGGTTCAAGC 106762 Query 2829 CCGGGCTTCAGC 2840 | ||| |||||| Sbjct 106761 CTGGGTTTCAGC 106750 >seq15683 Length=208 Score = 78.8 bits (86), Expect = 3e-11 Identities = 60/71 (85%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||| ||||||||||||| ||||||||| |||||| ||||||| | |||||||||||| Sbjct 86 ATGGTTGAAGTAGCTCAGCGGGGAGAGCACTAGACTCAAGATCTCACTGTCCCTGGTTCA 27 Query 2826 ACCCCGGGCTT 2836 | | |||||| Sbjct 26 AGGCAGGGCTT 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15835295785530