Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq12519 185 1e-40 seq10431 185 1e-40 seq5929 185 1e-40 seq230 179 5e-39 seq3868 170 3e-36 seq10844 118 2e-20 seq11853 107 3e-17 seq476 107 3e-17 >seq12519 Length=28616 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 16241 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 16294 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 16295 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 16354 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 16355 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 16414 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| |||| || ||||||||||||||||||||||| Sbjct 16415 CTGCTGCTGCCCGGCGAGCTGGGCAAGCACGCCGTCTCCGAGGGCACCA 16463 >seq10431 Length=40340 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 5621 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 5674 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 5675 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 5734 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 5735 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 5794 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 5795 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 5843 >seq5929 Length=56348 Score = 185 bits (204), Expect = 1e-40 Identities = 179/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 11938 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 11885 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 11884 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 11825 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| |||||||||||||| ||||| Sbjct 11824 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACCGCGGTGCGG 11765 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||| ||||||||||||| Sbjct 11764 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 11716 >seq230 Length=27797 Score = 179 bits (198), Expect = 5e-39 Identities = 178/229 (78%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||||| Sbjct 8510 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCATG 8457 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || |||||||| |||| ||||||| | |||||| ||| Sbjct 8456 GGCATCATGAACTCCTTCGTGAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 8397 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 8396 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 8337 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| |||||| ||||||||||||||||||||||| Sbjct 8336 CTGCTGCTGCCCGGCGAGTTGGCCAAGCACGCCGTCTCCGAGGGCACCA 8288 >seq3868 Length=532548 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| || || |||| || |||| ||| Sbjct 4151 TACAAGGTGCTGAAGCAGGTGCACCCGGACAC-----GGGCATC-TCGTCCAAGGCCAGC 4204 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || || ||||| || |||| ||||||| | |||||| ||| Sbjct 4205 GGCATCATGAACTCCTTCGTGAACGAAATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 4264 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 4265 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 4324 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||||||||||||||||||||||| Sbjct 4325 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 4373 >seq10844 Length=18256 Score = 118 bits (130), Expect = 2e-20 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| ||| || |||||||| ||| |||||||||||||| ||||||||||||||| Sbjct 9962 TGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTCAAGCAG 9903 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCC 260089 |||||||||||||||||| | || || |||||||| |||||| | | |||||| Sbjct 9902 TGCGCGCTCATCTCCAAGTCCGCGGGGGGCATCGGCCTTGCCGTGAGCTGCATCCGCGCC 9843 Query 260090 GCGGGCGCCTACGTGGCGGG 260109 ||||| |||| | ||||| Sbjct 9842 ACGGGCAGCTACATCGCGGG 9823 Score = 98.7 bits (108), Expect = 1e-14 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| || || ||| | | || | ||||| ||||| ||||||||| ||||| Sbjct 6965 CAGCTGTGGTACGCGATCATCGAGTCGCAGACGGAGACGGGCACCCCCTACATGCTCTAC 6906 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || ||||| | |||||||||||||||||||| |||| | || | ||| Sbjct 6905 AAGGACTCCTGCAACCGCAAGAGCAACCAGCAGAACCTGGGGACCATCA-AGTGCAGCAA 6847 Query 262210 CCTGTGCACCGAGATCGT 262227 ||||||||| |||||||| Sbjct 6846 CCTGTGCACGGAGATCGT 6829 >seq11853 Length=150111 Score = 107 bits (118), Expect = 3e-17 Identities = 93/114 (82%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || |||||| ||||| ||| | |||||||||| ||||| Sbjct 136754 GAGCCGCTGCTGCGGGAGAACCCGCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 136695 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 | ||| | |||||| || ||||||||||||||||| ||||||||||||||||| Sbjct 136694 GTGTGGCAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGT 136642 >seq476 Length=41894 Score = 107 bits (118), Expect = 3e-17 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| ||||| ||||||||||| |||||||| ||||| | || ||| | || Sbjct 30446 CTCCTCCAAGGCCATGAGCATCATGAACTCCTTTGTCAATGACATCTTTGAGCGCCT-GG 30504 Query 725018 CA-CCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076 || | |||||| |||||||| | || |||| | ||| ||| ||| || || ||| Sbjct 30505 CAGCAGAGGCCTCCCGCCTGGCCCACTACAACCACCGCTCCACCATCACCAGCCGTGAGG 30564 Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136 | ||||| || ||||| || | ||| || || ||||||| ||| || ||||| |||| Sbjct 30565 TGCAGACGGCGGTGCGGCTCCTGCTGCCGGGGGAGCTGGCCAAGCATGCGGTCTCGGAGG 30624 Query 725137 GCACCA 725142 |||||| Sbjct 30625 GCACCA 30630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7169852573039268