Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq8606 132 4e-26 seq5912 118 1e-21 >seq8606 Length=302679 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || ||| || |||| ||||||||||| || ||||| Sbjct 263366 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCAGCAAAG 263307 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| |||| || | || ||||||||| |||||| ||||| | || Sbjct 263306 ATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTT 263247 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||||| | || ||||| | ||||| || || || |||| || |||||| Sbjct 263246 TCAATAGTGTCGCTAGGCTCGACCTCAAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACA 263187 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 263186 AAGATCTGCAT 263176 Score = 132 bits (146), Expect = 4e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 263594 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAG 263535 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| |||| || | || |||||||||| |||||| ||||| | | Sbjct 263534 ATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 263475 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | ||| ||||||| ||||| || || || |||| || |||||| Sbjct 263474 TCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 263415 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 263414 AAGATCTGCAT 263404 Score = 129 bits (142), Expect = 5e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 263822 TCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAG 263763 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||| |||| || | || |||||||||| |||||| ||||| | | Sbjct 263762 ATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 263703 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | ||| ||||||| ||||| || || || |||| || |||||| Sbjct 263702 TCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 263643 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 263642 AAGATCTGCAT 263632 >seq5912 Length=13300 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || ||||| Sbjct 9150 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAA 9209 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | | ||||| ||| |||||| ||| | | | Sbjct 9210 GATCAGCCTCTGCTGATCTGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTGACATT 9269 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || || |||||||| ||||| Sbjct 9270 CTCAATGGTGTCACTAGGCTCAACCTCCAAGGTGATGGTCTTCCCTGTCAAAGTCTTCAC 9329 Query 35725 AAATATCTGCATT 35737 ||| ||||||||| Sbjct 9330 AAAAATCTGCATT 9342 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| || | || ||||||||||| || ||||| Sbjct 8694 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAA 8753 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | || ||||| || |||||| ||||| | Sbjct 8754 GATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCTTGGATCTTGGCCTTCACGTT 8813 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || || |||| ||||| ||||| || |||| || ||||| Sbjct 8814 CTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTTTTCCCTGTCAGGGTCTTCAC 8873 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 8874 AAAGATCTGCAT 8885 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| |||| || ||| || | || ||||||||||| || || || Sbjct 8922 CTCCTTCTGGATATTGTAGTCGGACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAA 8981 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | || | || ||||| ||| ||||| ||||| | Sbjct 8982 GATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTATCCTGAATCTTGGCCTTCACGTT 9041 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || || |||| ||||| ||||| || |||| || ||||| Sbjct 9042 CTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTTTTCCCTGTCAGGGTCTTCAC 9101 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 9102 AAAGATCTGCAT 9113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450328640211120