Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7236 107 2e-18 seq11853 100 2e-16 >seq7236 Length=503087 Score = 107 bits (118), Expect = 2e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||| ||||| ||| | ||||||||||| ||| ||||||||| ||| Sbjct 201278 TGATGGCTTTGCCTCCTTGCCATGCTCTTTGTCAGTTTTATGTTGTAAATGGTGAATTGT 201337 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || |||||||| || || || || || || || | Sbjct 201338 CCTGCCAACTCTATCAGAGGTCTGGAGATATGGGACTGGGAGTGCCCTTCAATATTGCCA 201397 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || ||||| || || || || Sbjct 201398 GCTATTCACTGCTCACATACATGATAGCCCATGTCAC 201434 >seq11853 Length=150111 Score = 100 bits (110), Expect = 2e-16 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 |||||| || | ||||||| || ||||| ||||| || || |||||||| ||||| || Sbjct 135851 AGAAGTACAGATCACAGAAGCGCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAACAT 135792 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||||| ||||||||||||||||| || || || ||||| ||||| Sbjct 135791 ACATTCAGAAATGTACAGTCTTCTAATTGACACATACATTAAAGA 135747 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 44495 AACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAA 44554 || || ||||| || |||||||| || || ||||||||||||| ||||| ||||| || Sbjct 132581 AATCCTTTTGACTTCATGGAAAACATCTCTCTGGAAGGCAAAACGAACTTCTTTGAGAAG 132522 Query 44555 CGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || || ||||||||| | ||||| |||||| Sbjct 132521 CGAGTAGGTGAATATCAGAGGATGGGAGTCATG 132489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397056302596570