Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5912 102 7e-17 seq8606 100 2e-16 >seq5912 Length=13300 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | || |||| |||| || | || || || || || |||||||||||| Sbjct 8885 TGCCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCGG 8944 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || | |||| | || || ||||| || || ||| | || || | ||| ||||| || | Sbjct 8945 ACAGGGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCTGGGG 9004 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || ||||| |||||| |||| | | || | ||||| ||| |||| Sbjct 9005 GGATGCCTTCCTTATCCTGAATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAA 9064 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| || || || | ||| || ||||| || ||||||||||| ||||| Sbjct 9065 CTTCCAGGGTGATGGTTTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 9113 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || || || || || |||||||| || | |||| | Sbjct 8671 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA 8730 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || || ||||| || || || | || || | ||| ||||| || || | || || ||| Sbjct 8731 TCCTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGGATGCCTTCCTTA 8790 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| | | || | ||||| ||| |||||||| || || || Sbjct 8791 TCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATG 8850 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || ||||| || ||||||||||| ||||| Sbjct 8851 GTTTTCCCTGTCAGGGTCTTCACAAAGATCTGCAT 8885 >seq8606 Length=302679 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || || || || || ||||||||| || | |||| || Sbjct 263390 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCG 263331 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | || || | ||| |||||||| || | || || || Sbjct 263330 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCTTCCTTG 263271 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| |||| | |||||| | | || || || ||||| || Sbjct 263270 TCCTGGATCTTGGCCTTCACATTTTCAATAGTGTCGCTAGGCTCGACCTCAAGAGTGATG 263211 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 263210 GTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 263176 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| |||| || | || || || || || || ||||||||| || | |||| | Sbjct 263618 CGCAGCACCAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCA 263559 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| ||||| || || || | || || | ||| |||||||| || | ||||| || Sbjct 263558 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTG 263499 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| |||| | || | ||||| ||| |||||| || || || || Sbjct 263498 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATG 263439 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||||| ||||| || ||||||||||| ||||| Sbjct 263438 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 263404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | ||||| ||||| || || Sbjct 263828 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCA 263769 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| |||||||| || | ||||| || || ||||||| ||| Sbjct 263768 GCAAAGATCAGCCTCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 263709 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| ||| |||||| || || || || | ||||| ||||| || Sbjct 263708 ACATTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 263649 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 263648 TTCACAAAGATCTGCAT 263632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424507069235568