Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq10844 109 6e-19 seq11103 87.8 2e-12 >seq10844 Length=18256 Score = 109 bits (120), Expect = 6e-19 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713 ||||||||||| | ||||||||||| ||||||||| ||||||||| |||||||||||| Sbjct 9868 CCGATGCCCCCCGCGGACTTGGAGATGAGCGCGCACTGCTTGAGCGTGTCGTAGATGCCC 9927 Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 ||||| |||||||||||| | |||||||||||| Sbjct 9928 TCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCAGCT 9965 Score = 105 bits (116), Expect = 7e-18 Identities = 82/98 (84%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||| ||||| || |||||||| |||||||| |||||||||||||| ||||||||| Sbjct 9965 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTCAAG 9906 Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 ||||||||| ||||||||||| | ||||| ||||| Sbjct 9905 CAGTGCGCGCTCATCTCCAAGTCCGCGGGGGGCATCGG 9868 >seq11103 Length=185963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 59991 GCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || ||||| ||| || |||||||||||||| || || || || |||||| || ||||| Sbjct 141412 GCCTTTGC-TGCAGTTGAAGGAATCTTCTTTTCCGGTTCCTTTGCTGCTATATTTTGGCT 141354 Query 60050 CAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGA 60109 || ||| | ||||| ||||| || |||| ||||||||| ||||| || ||| || || Sbjct 141353 GAAGAAGAGAGGCCTGATGCCTGGACTGACTTTCTCCAATGAGCTCATCAGCCGAGATGA 141294 Query 60110 GG 60111 || Sbjct 141293 GG 141292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547959037808160