Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq10844 91.5 2e-13 seq2212 91.5 2e-13 seq9722 84.2 2e-11 >seq10844 Length=18256 Score = 91.5 bits (100), Expect = 2e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||||| || |||||||| ||| ||||| ||||||||||| ||||||||| Sbjct 9965 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAGGGCATCTACGACACGCTCAAG 9906 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG 53427 |||| || | ||||||||||| |||| || ||||| Sbjct 9905 CAGTGCGCGCTCATCTCCAAGTCCGCGGGGGGCATCGG 9868 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||||||| | | ||||||||||| || || || ||||||||| ||||||| ||||| | Sbjct 2933 CCTGCTCCTTTCTCCAATGCCAACTGCTTCAACTGCTCAGATCCTGGGCAATAACGAATC 2874 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT 55606 ||||||| ||||| | |||||||||| ||| || ||| | || |||||| Sbjct 2873 CATCGAGCCCTACACCAGCAACATCTACACACGCAGGGTCCTCTCGGGAGAGTTT 2819 >seq2212 Length=505317 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || ||||||| ||| |||||||||||||||||| ||| | ||||| || || Sbjct 123157 GTGAAGATATAACGAGGGCTGGCAGCATCCTTGCCACCATGAAGCCTGGTACCAAACTGC 123098 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | || || || | ||||| || |||||||| || |||||||||||| Sbjct 123097 CCAATAGGTTGCAGCAGATTAACATTGTTACTCCCAACAAAGTTCTGGGCCAAGTTGACA 123038 Query 117425 ATCGT 117429 || || Sbjct 123037 ATAGT 123033 >seq9722 Length=145350 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || ||||||||||| | |||||| | || || ||||| ||||| || ||||||||| Sbjct 12517 GTAAAGATGTATCGAGGGCTGGCAGAGTCTTTCCCACCATGCAGCCTTGTACCAAACTGT 12576 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATT 152144 ||| ||||| || | |||||| || ||| |||||| || |||||||| || || Sbjct 12577 CCAATGGGCTGCAGCAAGTTGAGATTATTGCTGCCCACAAAGTTCTGAGCTAAGTT 12632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546651587737200