Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq5238 196 6e-45 seq4230 140 4e-28 >seq5238 Length=836009 Score = 196 bits (216), Expect = 6e-45 Identities = 263/364 (72%), Gaps = 4/364 (1%) Strand=Plus/Minus Query 13675 TGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCG 13734 |||||||||| |||| ||||| |||||||||||||| || || |||||| |||| || | Sbjct 524965 TGAGCCTGGAGGAGGCTGAGTTCCCCATCGCCTACTCCATGGTCATCCACGACAAAATTG 524906 Query 13735 AGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACG 13794 ||||||| ||||| |||||| | || |||||||||| ||||||||||||||| |||| | Sbjct 524905 AGATGTTTGAGCGGCTCCTGCGATCCCTCTACGCCCCCCAGAACCTCTACTGCATCCATG 524846 Query 13795 TGGACTCCAAGTC--CGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTT 13852 | ||| |||||| | || || ||| || ||| ||||||||| ||||| Sbjct 524845 TTGACAGCAAGTCGACAGCCAC--CTTCCAGGAGGCCGTGCGAGCCATCGCCGCCTGCTT 524788 Query 13853 CCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGT 13912 ||| || || ||||| || ||| | | ||||| || | ||||||| || | Sbjct 524787 CCCCAATGTCTTTGTGGCCAGTCGCCTGGAGAATGTGGTCTATGCCTCCTGGTCCCGGCT 524728 Query 13913 GCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCT 13972 |||||| ||||| | ||||||| ||||||| | |||| | ||| | ||||| Sbjct 524727 GCAGGCTGACCTGAACTGCATGCAGGACCTGCTCCAGAGCCCCATACCCTGGCGCTACCT 524668 Query 13973 GCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCT 14032 |||||| || || | |||||||| ||||||||||| |||||||| || | || Sbjct 524667 CCTCAACACCTGTGGCACTGACTTCCCCATCAAGACCAACGCAGAGATCGTCCGCACCCT 524608 Query 14033 GAAG 14036 |||| Sbjct 524607 GAAG 524604 >seq4230 Length=17431 Score = 140 bits (154), Expect = 4e-28 Identities = 262/379 (69%), Gaps = 12/379 (3%) Strand=Plus/Minus Query 13682 GGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA---TCGAGAT 13738 ||| |||| || || ||| |||||||| ||| ||| | |||||| |||||| Sbjct 435 GGAGGAGGCCGCCTTCCCCCTCGCCTAC---ATCATGACGCTGCACAAGGAGTTCGAGAC 379 Query 13739 GTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGA 13798 |||||||| ||| | |||| ||||| || |||||| ||||||||||||||||||| Sbjct 378 CTTCGAGCGGCTCTTCCGGGCGGTCTACATGCCCCAGAACGTCTACTGCGTCCACGTGGA 319 Query 13799 CTCCAAGTC--CGGCGACGAGTTCATCCGGGGCGTCTCG-GCCATCGCCAGGTGCTTCCC 13855 | ||| | |||| || ||| || ||| | | ||| | | | |||||||| Sbjct 318 CCAGAAGGCGCCGGC--CGCCTTCCAGGAGGCCGTGTGGCGCCTGCTGC-GCTGCTTCCC 262 Query 13856 TAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCA 13915 |||| ||||||| | || | | |||||| |||||| | ||| ||| Sbjct 261 CAACGCCTTCCTGGCCTCCAGGACGGAGCGCGTGGTCTACGGCGGCATCTCGCGCCTGCG 202 Query 13916 GGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCT 13975 ||||||||| ||||||| |||||| |||||| |||| |||| ||||||||| Sbjct 201 CGCCGACCTCCACTGCATGCGCGACCTGCTGGCCTCCGCCGTGCCCTGGAAGTACCTGCT 142 Query 13976 CAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAA 14035 |||| |||||| ||||||||| | |||||||||| |||||||| | | ||| || Sbjct 141 CAACACCTGCGGGCAGGACTTCCCCTTGAAGACCAACCGCGAGATCGTCCAGCAGCTCAA 82 Query 14036 GGCCCTGGGCGGCAAGAAC 14054 || | | | |||| |||| Sbjct 81 GGGCTTCCGAGGCAGGAAC 63 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658059759920640