Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq7236 111 1e-19 seq10106 82.4 6e-11 >seq7236 Length=503087 Score = 111 bits (122), Expect = 1e-19 Identities = 130/173 (75%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292 || ||||| || || |||||||||||||| || || || ||||||| || |||||||| Sbjct 198495 TATTCTGCCCCAAAGTGCCTCCACTGGAAACCATAAACGGGTCCCAAATCACCCTCTTCT 198436 Query 30293 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30352 |||| ||| ||| ||| |||| || || | || || ||||| ||||| ||||| Sbjct 198435 CTGTTGCAGAAACCCTGCTTATCCAGGAACTCACGTGAGCCATTGGCATCCCAAATCTTC 198376 Query 30353 ACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30405 || ||||| ||||||| ||||||| ||||| || || || || || ||||| Sbjct 198375 ACACCCTTTGCAGAGAGTTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 198325 Score = 111 bits (122), Expect = 1e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 29941 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 30000 ||| || ||||| || || |||||||| ||||| || || |||||||| || || ||||| Sbjct 201441 TAGGCCTGTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAGGG 201382 Query 30001 TACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCT 30060 || || || ||||| || || |||||||| ||||| || || || | || || | Sbjct 201381 CACTCCCAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAGGACAATTCACCATTTAC 201322 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 || ||||||||||| | || ||||| ||||| | |||||| ||| Sbjct 201321 AACATAAAACTGACAAAGAGCATGGCAAGGAGGCAAAGCCATCAGG 201276 >seq10106 Length=330250 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || |||||||| |||| || || |||||| | | ||| | |||||| || || Sbjct 248821 TTGAGTTCTCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGGCGATTCTTCTCCGGA 248762 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||| ||||| || ||| ||||||||||||| | ||||| || ||| Sbjct 248761 ATGGAAAACCAGGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 248714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405901798263288