Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7236 87.8 2e-12 >seq7236 Length=503087 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| || ||||| | ||| |||||||| ||||| || | || || || || || | Sbjct 198351 CCAAAGAACTCTCTGCAAAGGGTGTGAAGATTTGGGATGCCAATGGCTCACGTGAGTTCC 198410 Query 34362 TGGACAAGCGGGGGTTCC-CATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTC 34420 |||| |||| ||| ||| || | | || ||||| || ||||| || || || || ||| Sbjct 198411 TGGATAAGCAGGGTTTCTGCAACA-GAGAAGAGGGTGATTTGGGACCCGTTTATGGTTTC 198469 Query 34421 CAGTGGAGACACTTTGGGGCGGAGTAT 34447 |||||||| ||||||||||| || ||| Sbjct 198470 CAGTGGAGGCACTTTGGGGCAGAATAT 198496 Score = 87.8 bits (96), Expect = 2e-12 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 ||| || ||||||||||| ||||||||||| || || || || ||||| || ||||| || Sbjct 198496 ATATTCTGCCCCAAAGTGCCTCCACTGGAAACCATAAACGGGTCCCAAATCACCCTCTTC 198437 Query 6958 CCGAGATG-GGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCT 7016 | | || ||| ||| |||| ||||| || || || || || | || ||||| |||| Sbjct 198436 TC-TGTTGCAGAAACCCTGCTTATCCAGGAACTCACGTGAGCCATTGGCATCCCAAATCT 198378 Query 7017 TCACCCCCCGGGACGAGAGCTCCTTGG 7043 |||| ||| | ||||| || |||| Sbjct 198377 TCACACCCTTTGCAGAGAGTTCTTTGG 198351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447800050954080