Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2289 100 2e-16 seq7236 87.8 1e-12 >seq2289 Length=615122 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || ||||||||||| || || ||||||||| | || || || ||||| ||| Sbjct 540918 GTGGTGGAGGATCTCTTCCGAGACGGCGTCAACTGGGGGAGGATCGTGGCCTTCTTCGAG 540859 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||| ||||| |||||||| | | || | | || || |||| | Sbjct 540858 TTCGGTGGCGTCATGTGCGTGGAGAGCGTCAACCGGGAGATGTCGCCGCTGGTGGACAGC 540799 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||||| |||||||| || Sbjct 540798 ATCGCCGCCTGGATGACCGA 540779 >seq7236 Length=503087 Score = 87.8 bits (96), Expect = 1e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | || || ||||||||||| | || |||||||| | ||| || || Sbjct 201440 AGGCCTGTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAGGGC 201381 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 || ||||| ||||| ||| | || ||||| || | |||||| || | || || ||| || Sbjct 201380 ACTCCCAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAGGACAATTCACCATTTACA 201321 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||||||||||| | || || ||||||| | |||| Sbjct 201320 ACATAAAACTGACAAAGAGCATGGCAAGGAGGCAAAGCCAT 201280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414059985809896