Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq7236 118 9e-22 seq10106 82.4 6e-11 >seq7236 Length=503087 Score = 118 bits (130), Expect = 9e-22 Identities = 125/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29713 TAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGG 29772 ||| || ||||| || || |||||||| ||||| || || |||||||| || || ||||| Sbjct 201441 TAGGCCTGTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAGGG 201382 Query 29773 CACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCT 29832 ||| || || ||||| || || |||||||| ||||| ||||| || | || || | Sbjct 201381 CACTCCCAGTCCCATATCTCCAGACCTCTGATAGAGTTGGCAGGACAATTCACCATTTAC 201322 Query 29833 CACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 || ||||||||||| | |||||||| ||||| | ||||| || Sbjct 201321 AACATAAAACTGACAAAGAGCATGGCAAGGAGGCAAAGCCATCAG 201277 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| || || || ||||||| || |||||||| |||| ||| Sbjct 198483 AAGTGCCTCCACTGGAAACCATAAACGGGTCCCAAATCACCCTCTTCTCTGTTGCAGAAA 198424 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||| |||| || || | || || ||||| ||||| ||||| || ||||| | Sbjct 198423 CCCTGCTTATCCAGGAACTCACGTGAGCCATTGGCATCCCAAATCTTCACACCCTTTGCA 198364 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177 ||||| ||||||| ||||| || || || || || ||||| Sbjct 198363 GAGAGTTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 198325 >seq10106 Length=330250 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || |||||||| |||| || | |||||| | | ||| | |||||| || || Sbjct 248821 TTGAGTTCTCTGCTGAGCACTATATTAATTCTGTCTTTTAAAGGGCGATTCTTCTCCGGA 248762 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||| ||||| || ||| ||||||||||||| | ||||| |||||| Sbjct 248761 ATGGAAAACCAGGTTTTTTTACCCATTATCACTGCATTCTGTTTACCT 248714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405754746293404