Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq11853 113 4e-20 seq11103 102 7e-17 seq39362 98.7 8e-16 >seq11853 Length=150111 Score = 113 bits (124), Expect = 4e-20 Identities = 106/134 (79%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| | ||||| || || ||||| |||||||| || | ||| |||||||| || Sbjct 133712 ATTCATACCT-CATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCC 133770 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 ||| || || |||||||| || | ||||| || ||||||||||| || || ||||| || Sbjct 133771 TCTTTTCTTCAGCCAAAAGATTGATGCAAAGGAGCCAGAAAAGAAGATTCCCTCTACTGC 133830 Query 4682 GGCAAACGCTACTA 4695 ||||| ||||||| Sbjct 133831 TGCAAAAGCTACTA 133844 >seq11103 Length=185963 Score = 102 bits (112), Expect = 7e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996 |||||| ||||| || || || |||||||||||||| |||| ||||||||| |||||||| Sbjct 144652 GTTTTCATTTACAATTCCATCGCTGGCTGCAAAAAAGGCCAGAACATGAGAGATAAAGTA 144711 Query 4997 CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 | ||| || | || || || |||||||| |||| || || | ||||||||| Sbjct 144712 TTTTTCATCTGCTTTTAGCTTGTTCCAGTGTGGCAGGTCCTTTGATAAATCAAC 144765 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996 |||||||||||| || || || |||||||||||||| |||| ||||||||| | |||||| Sbjct 145492 GTTTTCGTTTACAATTCCATCGCTGGCTGCAAAAAAGGCCAGAACATGAGAGAGAAAGTA 145551 Query 4997 CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 | ||| || | || || || |||||||| |||| || || | ||| ||||| Sbjct 145552 TTTTTCATCTGCTTTTAGCTTGTTCCAGTGTGGCAGGTCCTTTGATAAGTCAAC 145605 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || |||| ||| || || || || || || || | ||| ||||| | |||||||| || Sbjct 141294 TCATCTCGGCTGATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 141353 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| || ||||| || || ||||| || Sbjct 141354 AGCCAAAATATAGCAGCAAAGGAACCGGAAAAGAAGATTCCTTCAACTGCAGCAAAGGCA 141413 Query 4692 AC 4693 || Sbjct 141414 AC 141415 >seq39362 Length=416 Score = 98.7 bits (108), Expect = 8e-16 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 4937 GTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTA 4996 |||||||||||| || || || |||||||||||||| |||| ||||||||| | |||||| Sbjct 24 GTTTTCGTTTACAATTCCATCGCTGGCTGCAAAAAAGGCCAGAACATGAGAGAGAAAGTA 83 Query 4997 CTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 | ||| || | || || || |||||||| |||| || || | ||| ||||| Sbjct 84 TTTTTCATCTGCTTTTAGCTTGTTCCAGTGTGGCAGGTCCTTTGATAAGTCAAC 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426620142107162