Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11853 107 3e-18 seq10844 93.3 6e-14 seq11103 87.8 2e-12 >seq11853 Length=150111 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | ||| |||||||| ||||| || ||||||| ||| | ||| || Sbjct 133721 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 133780 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || || || ||||||||||| || || ||||| || ||||| || Sbjct 133781 AGCCAAAAGATTGATGCAAAGGAGCCAGAAAAGAAGATTCCCTCTACTGCTGCAAAAGC 133839 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 48402 TCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGCC 48461 ||||||| ||| || || |||| |||||| |||||||| || || || ||||| || || Sbjct 135747 TCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGCA 135806 Query 48462 ATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || || || ||||| | |||||||||||||||||| || Sbjct 135807 ATCTGGAAGCCATAGAAACAACGCGCTTCTGTGATCTGTACTTC 135850 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || || || ||||||||| Sbjct 132487 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTCGTTTTGCCT 132546 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||| || || |||||||| || ||||| ||||| |||| || || || Sbjct 132547 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTATAT 132596 >seq10844 Length=18256 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| |||||||| || |||||| || | || || || || || || | Sbjct 1013 TCCACCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 1072 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||| || || || |||||||||||||| || || ||||| || | ||||| | Sbjct 1073 TGAGAGACTGGCTCTGGTCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATGGTTT 1132 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | || ||||| | || || | | ||| || | |||||| |||| Sbjct 1133 TCTGGGAGATCTCCCACACGGTCTTATAGAGTTGCTTCAAATCATCAGGAA 1183 Score = 89.7 bits (98), Expect = 7e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 78742 CACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAA 78801 |||| || | ||| || ||||||||||| ||||| || || || || || || || || | Sbjct 13957 CACTGAACACTTTCTTGGTTTCCTTGTGCAGATTGGACACGGCGATCCTCGCCGCCAGGA 14016 Query 78802 TAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATATCTA 78861 |||| || ||||| |||| || || ||| || || |||| || || | | | || | Sbjct 14017 TAGCGTAGTCAGGGTGTTTGGTGGTCAGAGTCGCAGCCGTTTCAGCAGCCAGAGTGTCCA 14076 Query 78862 ACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 || | || ||||| ||| | || || || ||||| |||||||||| ||| Sbjct 14077 GTTCCACTGTGGTGACACCACTGTAGAGCCCCTGAATCACTTTCATGGTGAT 14128 >seq11103 Length=185963 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 48639 ACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTG 48698 || ||||| ||||||||||| || || | |||| ||||||||| |||||||| || | Sbjct 147601 ACCTCTTCTGCTGTCCAAAAAGAGGCTTGAGCTTGTTTATACATTTTCCATATGTCTGGG 147660 Query 48699 TATTGGATTGGGAAAATAACAAATCTATTTGGATTTTT 48736 || ||||| ||||| || ||||||| || |||||||| Sbjct 147661 TACTGGATGGGGAAGATGACAAATCGATGGGGATTTTT 147698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693952301232960