Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq11853 102 1e-16 seq10844 93.3 6e-14 seq11103 89.7 7e-13 >seq11853 Length=150111 Score = 102 bits (112), Expect = 1e-16 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||||| ||||| || |||| |||||| |||||||||||||| |||||||| || || Sbjct 135747 TCTTTAATGTATGTGTCAATTAGAAGACTGTACATTTCTGAATGTATGTTTTCCATGGCA 135806 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTAC 46999 ||||| || || || ||||| | ||||| || |||||||| |||| || Sbjct 135807 ATCTGGAAGCCATAGAAACAACGCGCTTCTGTGATCTGTACTTCTGGAC 135855 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | ||| |||||||| ||||| |||||||||| ||| | || || Sbjct 133721 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 133780 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | || || || ||||||||||| || || ||||| || || || || Sbjct 133781 AGCCAAAAGATTGATGCAAAGGAGCCAGAAAAGAAGATTCCCTCTACTGCTGCAAAAGCT 133840 Query 46774 AC 46775 || Sbjct 133841 AC 133842 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 |||||| |||||||| | || ||||||||||| || ||||| || || || |||||||| Sbjct 132486 TGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAGTTCGTTTTGCC 132545 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATT 46418 ||||| || || |||||||| || ||||| ||||| Sbjct 132546 TTCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 132581 >seq10844 Length=18256 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| |||||||| || |||||| || | || || || || || || | Sbjct 1013 TCCACCCGTAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 1072 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | ||||| || || || |||||||||||||| || || ||||| || | ||||| | Sbjct 1073 TGAGAGACTGGCTCTGGTCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATGGTTT 1132 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | || ||||| | || || | | ||| || | |||||| |||| Sbjct 1133 TCTGGGAGATCTCCCACACGGTCTTATAGAGTTGCTTCAAATCATCAGGAA 1183 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/167 (73%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| || ||||||||||| ||||| || ||||| || || || || || || Sbjct 13959 CTGAACACTTTCTTGGTTTCCTTGTGCAGATTGGACACGGCGATCCTCGCCGCCAGGATA 14018 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAG-GTGGCTGCTATTTCTGCCGCTAAAGTATCTAA 77457 || |||||||| |||| || || ||| || || || |||| || || | ||| || | Sbjct 14019 GCGTAGTCAGGGTGTTTGGTGGT-CAGAGTCGCAGCCGTTTCAGCAGCCAGAGTGTCCAG 14077 Query 77458 TTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 ||| | || || || || | || ||||| ||||| |||||||||| Sbjct 14078 TTCCACTGTGGTGACACCACTGTAGAGCCCCTGAATCACTTTCATGG 14124 >seq11103 Length=185963 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||| || || | || || || || || || |||||||| || || | ||| || Sbjct 141294 TCATCTCGGCTGATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 141353 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || || || |||||||| || ||||| || || || || || Sbjct 141354 AGCCAAAATATAGCAGCAAAGGAACCGGAAAAGAAGATTCCTTCAACTGCAGCAAAGGCA 141413 Query 46774 ACAAGTCTCTCTCC 46787 || | |||||| || Sbjct 141414 ACCACTCTCTCACC 141427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712199061636480