Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq11853 111 2e-19 seq68638 86.0 7e-12 seq11103 86.0 7e-12 seq3660 86.0 7e-12 >seq11853 Length=150111 Score = 111 bits (122), Expect = 2e-19 Identities = 102/129 (79%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| ||||| || | |||||||||||| || | ||| ||||||||||||| ||| || Sbjct 133721 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 133780 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | |||||| |||| ||||| || || |||||||| || ||||| || || ||||| || Sbjct 133781 AGCCAAAAGATTGATGCAAAGGAGCCAGAAAAGAAGATTCCCTCTACTGCTGCAAAAGCT 133840 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 133841 ACTACACGT 133849 >seq68638 Length=966 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 139428 AGGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGC 139487 |||||| |||| | ||||| |||||||| || | ||||| ||||||||||| ||||| Sbjct 295 AGGTGTGTTACACAGCAAATTCTGGATTGTAGACATGAAACACATATATATTGGTAGTGC 354 Query 139488 TAACATGGACTGGCGATCACTAACTCAAGTAA 139519 |||||||||||| |||| || |||| |||| Sbjct 355 AAACATGGACTGGAGATCTTTATCTCAGGTAA 386 >seq11103 Length=185963 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||| | || || | ||||| || || || | ||| ||||| | |||| || || Sbjct 141294 TCATCTCGGCTGATGAGCTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCTCTCTTCTTC 141353 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||||||||| |||||||| || ||||||||||| || || ||||| || |||||||| Sbjct 141354 AGCCAAAATATAGCAGCAAAGGAACCGGAAAAGAAGATTCCTTCAACTGCAGCAAAGGCA 141413 Query 23653 AC 23654 || Sbjct 141414 AC 141415 >seq3660 Length=87941 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 139428 AGGTGTCCTACATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGC 139487 |||||| |||| | ||||| |||||||| || | ||||| ||||||||||| ||||| Sbjct 16672 AGGTGTGTTACACAGCAAATTCTGGATTGTAGACATGAAACACATATATATTGGTAGTGC 16613 Query 139488 TAACATGGACTGGCGATCACTAACTCAAGTAA 139519 |||||||||||| |||| || |||| |||| Sbjct 16612 AAACATGGACTGGAGATCTTTATCTCAGGTAA 16581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520950124239600