Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tinamus_20guttatus_20[refseq_20GCF_5F000705375.1_202014-08-05] 82,514 sequences; 1,047,056,493 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq5550 136 6e-27 seq11145 91.5 2e-13 >seq5550 Length=243327 Score = 136 bits (150), Expect = 6e-27 Identities = 209/298 (70%), Gaps = 0/298 (0%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 ||||||| | || || || || || |||||| |||| || ||| | | || Sbjct 176428 GGAACGCTGTGAAGGGGCAGCCTTTCACGTTGTGGCAGATGAGCTTCTGCAGGGAGGCTG 176487 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| || || |||||||| ||||||||| | |||| Sbjct 176488 TATTGATTATTTCAAAGCCCACTTTTCCCCCAAAAGTGCTGGGTTTCCAGTACTCGGGGG 176547 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || || || ||||||||||| || || | || | || Sbjct 176548 AGCAGATAGCATTGCCCATCAGTCCCTTCAGGGAGAACGGCGCTCCGATTTCCACCATCG 176607 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || ||||||||| || || ||||| || |||| || || | |||||||||| Sbjct 176608 TTTCGCCAAAGATGGCGCCTGGTCGAGGCTTCTCTACCAGGAGGCCTGGATACAGCTCCA 176667 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT 8586 ||| || | ||||| ||||| || ||||| || || || || ||||||||||| Sbjct 176668 TAGCGTCAATATCTCCATAAAGCTCCTCCAGTTCTGCTGCCATTTCTTTTTCTCCTGT 176725 Score = 132 bits (146), Expect = 7e-26 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| | || |||||||| || |||||||| ||| || ||||| || ||||||| Sbjct 178344 ATGAGCCTGGTAGTCTGGAAGAGGCGCTCGTCATCCCACTCGGGATGCTCCCGTTTCAGG 178403 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | |||||| || | |||||||| |||||||| || || || |||||||| | || || Sbjct 178404 ATATCGCAGACTCGATTGTGTTCTCTGAGCCATATTGTAGCATACATCATTAAACCTGGC 178463 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || ||||| | | ||| || || || || | ||||| Sbjct 178464 ACCAAACCAAACACCTCCTGCCCGACGGAGAACTGCAAGTGCTCAGGAACATGAGGAGGG 178523 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || | ||| | |||| ||| || || | ||| || |||||||| || ||||||||| Sbjct 178524 TACAGCATTTCTGCCTGCGTGTCCTTCACTGTGGGTGGGTACATTTCCCCATCAATCATC 178583 Query 9484 TGA 9486 ||| Sbjct 178584 TGA 178586 Score = 87.8 bits (96), Expect = 3e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 9646 TGTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCT 9705 || |||||||||||| || || |||| |||||| | || ||| || ||| ||| | Sbjct 179628 TGATCTTACCCCATGGCCAAGAGCTTTCGTGAAGCCAGGTCCTTTCGTGTGATCTGTCTT 179687 Query 9706 AAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGG 9765 ||| ||||| || ||||| || || | || || | ||||| | ||| ||||| ||||| Sbjct 179688 AAAGAACTGATGAGTGAAGTGCTGAGCGAAGAATGTGAACATCACGTTTGTGCCTTGGGG 179747 Query 9766 ATCGGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || ||| | || ||||||| || | | ||| ||||||| Sbjct 179748 GTCAGGAATAAACTTCCTCCGCAGCAAAAATTTCTCCACAA 179788 Score = 86.0 bits (94), Expect = 9e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| || || | || ||||| || || | || || || || |||||| ||| Sbjct 180158 ACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCCACTGGTGGCAGGCTCCTTGTGTA 180217 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 ||||||||||||||| | |||||||||||| ||| | ||||| ||||| | || Sbjct 180218 ATAGGAGAGATTGGAATATGCTTCCCAGCTTTTGTAGTTATAGTCACTATTGTAAGTTGG 180277 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGAGCCAGCaaaaaa 10071 ||||| |||||||||| ||||| ||| || |||||| Sbjct 180278 GGGGCTATCAATCAAATGTGATCTTGCTGGAAGAGAAAAAAA 180319 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 10387 CTTACGAGTTGTGCAGTCATGGTCGTAGAAACCCGTATGCGTGCAATCGCATTTGTACTG 10446 |||||| |||||||||| | |||| || ||||| |||||| ||||| | ||| | Sbjct 180986 CTTACGTGTTGTGCAGTTTTCCCCGTAAAATCCCGTCCTCGTGCAGTCGCACTCGTAGCG 181045 Query 10447 ATGGAACCCCACGGTCATGCAGATGCCTCTGTTTTGACACGGATGGGAGCAACAAGGGTT 10506 | ||||||| |||||||| | |||||||| || || || | ||||| |||||||| Sbjct 181046 GTCGAACCCCGTCGTCATGCACACCCCTCTGTTCTGGCAGGGGTTCGAGCAGCAAGGGTT 181105 Query 10507 GGCT 10510 |||| Sbjct 181106 GGCT 181109 >seq11145 Length=378118 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 8373 CTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGC 8432 |||| || || |||||||| ||||||||| | |||||||||||| ||| | | ||| | Sbjct 244747 CTCCACCAAATGTGCTGGGTTTCCAGTACTCGGGGGAGCAGATGGGGTTTCCTAGGAGCC 244806 Query 8433 CTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8492 | || | ||| || |||| || | ||| | ||||| || || || || | |||||| Sbjct 244807 CCTTCAAGGAAAATGGAGATCCAATCTCCACCATGCTTTCCCCAAACATTGAATTGGGAA 244866 Query 8493 GGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGG 8552 |||| || || | || || || ||| | ||||| || || | |||||| || || Sbjct 244867 GGGGTTTCTCGAGCAGCAAGCCCACGTAAAACTCCAGGGCATCAATGTCTCCATAGAGCT 244926 Query 8553 CCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || || || || |||| | ||||||| Sbjct 244927 CCTCCAGCTCTGCCGCCTTCTCTTCCTCTCCTG 244959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716137395346560