Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq1 107 2e-18
seq2 87.8 2e-12
>seq1
Length=54145758
Score = 107 bits (118), Expect = 2e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267
||| | |||| | | | || |||||||| |||||||| ||||||||||| || || |||
Sbjct 8045449 AAGACACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGC 8045390
Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327
||| || | ||||| | ||| ||||| ||||||||||| ||||||||||| || ||
Sbjct 8045389 ATTAGGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCT 8045330
Query 16328 TCAACAGATGCAAAAGC 16344
||||| | ||||| ||
Sbjct 8045329 TCAACTGCAGCAAAGGC 8045313
>seq2
Length=38276455
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531
|| ||||| ||||| || | ||||||||||||||| ||||| || || ||||| |||||
Sbjct 2052506 ATGTACGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTGG 2052565
Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569
|| |||||||| || || || || | ||||| |||||
Sbjct 2052566 AAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTC 2052603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511336498801520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |