Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq2 87.8 2e-12 >seq1 Length=54145758 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 16208 AAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGC 16267 ||| | |||| | | | || |||||||| |||||||| ||||||||||| || || ||| Sbjct 8045449 AAGACACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGC 8045390 Query 16268 ATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCC 16327 ||| || | ||||| | ||| ||||| ||||||||||| ||||||||||| || || Sbjct 8045389 ATTAGGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCT 8045330 Query 16328 TCAACAGATGCAAAAGC 16344 ||||| | ||||| || Sbjct 8045329 TCAACTGCAGCAAAGGC 8045313 >seq2 Length=38276455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || ||||| ||||| || | ||||||||||||||| ||||| || || ||||| ||||| Sbjct 2052506 ATGTACGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTGG 2052565 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || |||||||| || || || || | ||||| ||||| Sbjct 2052566 AAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTC 2052603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511336498801520