Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq7019 113 3e-20
seq1 96.9 3e-15
>seq7019
Length=13215502
Score = 113 bits (124), Expect = 3e-20
Identities = 91/110 (83%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| || ||| ||||||| || | |||||||||| |||| | ||| || |||||||||||
Sbjct 948439 CTTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTCAGAGGACGATTCTTCTCAGG 948498
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399
||| |||||||| || ||||||||||| |||| | |||||||||| |||
Sbjct 948499 AATGGAGAACCATGTTTTTTTACCCATTATCAGTGCATTCTGTTTACCTG 948548
>seq1
Length=54145758
Score = 96.9 bits (106), Expect = 3e-15
Identities = 122/168 (73%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812
|||||||| || |||||| | || | || |||||||| ||||| || || |||||||||
Sbjct 34290828 GTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCT 34290769
Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872
| |||||||| | || || |||||||||||||| || || | |||| |||||
Sbjct 34290768 AGTCCCATATCTCCAGACCTCTGATACAGTTGACAAGACAGTTCGCCATTTAGAACATAG 34290709
Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCT 101920
|| || | | |||| ||||| ||||| |||| || ||| |||
Sbjct 34290708 AACTGGCAAAGAGCATGGCAAGGTGGCAAGGCCATCAGAGAAATATCT 34290661
Score = 93.3 bits (102), Expect = 3e-14
Identities = 110/149 (74%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
|||| ||||||||||| || ||||||||||| || ||||| || ||||| | || || |
Sbjct 34287160 CTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAGTCCCCCT 34287101
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| |||||| |||| || | ||||| | || | |||||||| ||||||||||
Sbjct 34287100 CTTCTCTGGTGCAAAACCCCTGCTTATCCAGGAACTCACGTGATCCATTGGCATCCCAAA 34287041
Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181
| | ||| || ||| || |||||||||
Sbjct 34287040 TCTTCACACCTTTTGCAGAGAGCTCTTTG 34287012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361197548100686
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |