Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq2 114 2e-20 >seq1 Length=54145758 Score = 123 bits (136), Expect = 3e-23 Identities = 101/123 (82%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||| || | ||| ||||||||||| | ||| | Sbjct 8045433 CCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTCT 8045374 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | |||||||| || |||||||| || ||||| ||||| ||||||| Sbjct 8045373 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 8045314 Query 24277 CAA 24279 ||| Sbjct 8045313 CAA 8045311 >seq2 Length=38276455 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | || || ||||| |||||||| ||||||| ||| | || | Sbjct 2050875 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 2050934 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 2050935 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 2050994 Query 24277 CAATAAGTCTTTCTCC 24292 | | | || |||||| Sbjct 2050995 CTACTACTCGTTCTCC 2051010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593631161357280