Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq120 176 5e-39 seq1084 123 3e-23 >seq120 Length=655797 Score = 176 bits (194), Expect = 5e-39 Identities = 245/341 (72%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 83055 GGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGC 83114 ||||||| |||||||||| || || | ||||| | || | ||||||| | || Sbjct 617514 GGAGCAGCAGCTCGATGTCGTCCTGCAGCTTGATGGTCTCGAAGTGCCGGCTGTAGCGGC 617573 Query 83115 GCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGC 83174 | | ||| |||||| | ||||| | |||||||||||||||||||| |||||||| | Sbjct 617574 GGAAGGGAACGCCGTCGGGGCCCACGAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTAC 617633 Query 83175 GGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGC 83234 ||||||| || |||||| ||| ||| |||| | ||| |||| | ||||||| Sbjct 617634 GGCACACCGGCGACCAGATGATGTACTGCGGGTTGGTCATCAGCGCCGTGGGGTCGTCGT 617693 Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC-CCTTGCACCGTTG 83293 || ||||| |||||| ||||||| ||| ||||| || || || | | ||||| Sbjct 617694 GCGGGAAGGGCAGCGCCTCTTTCAGGAAGGTGAACAGCGGGTGCGCGCCCTTC-CCGTTC 617752 Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353 ||||||||||||||||| | | || || || | ||||||||| || || || |||| | Sbjct 617753 ACCTCGCACTTCTCGAACATGGTGAAATTGGGTTTGAAGCCGTTGCCGGGCCGCACGTAC 617812 Query 83354 TTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 | ||| || ||| |||||| | || |||||| ||||| Sbjct 617813 TCCAGCGAGCGCAGGATCTCCTCGTTGGTGGCGTTCTCCTG 617853 >seq1084 Length=4634 Score = 123 bits (136), Expect = 3e-23 Identities = 123/157 (78%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 83387 TTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCT 83446 ||| |||||| ||||||||||| || ||||| || ||||| ||||||| ||| | | Sbjct 2044 TTTACCTGGTAGCCGAACTGGTTGCAGGGGAAGCCCAGCACCACCAGCCGCCGCGGG--T 2101 Query 83447 AGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGAC 83506 || || |||||||| ||| | ||| ||||| ||||| |||||| | |||||||| ||| Sbjct 2102 AG-CGTGCCTGCAGCTGGTTGAGCTGGGTGTAGTCCCGCACCGTGGTGCCTCAGAGCGAC 2160 Query 83507 GCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543 || |||||||||||||| | ||||| || || |||| Sbjct 2161 GCCACGTTCTCGATGAGGACCACCCGCCCGCGGAAGA 2197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608704065027440