Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq120 176 5e-39
seq1084 123 3e-23
>seq120
Length=655797
Score = 176 bits (194), Expect = 5e-39
Identities = 245/341 (72%), Gaps = 2/341 (1%)
Strand=Plus/Plus
Query 83055 GGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGC 83114
||||||| |||||||||| || || | ||||| | || | ||||||| | ||
Sbjct 617514 GGAGCAGCAGCTCGATGTCGTCCTGCAGCTTGATGGTCTCGAAGTGCCGGCTGTAGCGGC 617573
Query 83115 GCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGC 83174
| | ||| |||||| | ||||| | |||||||||||||||||||| |||||||| |
Sbjct 617574 GGAAGGGAACGCCGTCGGGGCCCACGAGGAACTTCTCGAAGTTCCAGGAGACGTCGTTAC 617633
Query 83175 GGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGC 83234
||||||| || |||||| ||| ||| |||| | ||| |||| | |||||||
Sbjct 617634 GGCACACCGGCGACCAGATGATGTACTGCGGGTTGGTCATCAGCGCCGTGGGGTCGTCGT 617693
Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGC-CCTTGCACCGTTG 83293
|| ||||| |||||| ||||||| ||| ||||| || || || | | |||||
Sbjct 617694 GCGGGAAGGGCAGCGCCTCTTTCAGGAAGGTGAACAGCGGGTGCGCGCCCTTC-CCGTTC 617752
Query 83294 ACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGC 83353
||||||||||||||||| | | || || || | ||||||||| || || || |||| |
Sbjct 617753 ACCTCGCACTTCTCGAACATGGTGAAATTGGGTTTGAAGCCGTTGCCGGGCCGCACGTAC 617812
Query 83354 TTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
| ||| || ||| |||||| | || |||||| |||||
Sbjct 617813 TCCAGCGAGCGCAGGATCTCCTCGTTGGTGGCGTTCTCCTG 617853
>seq1084
Length=4634
Score = 123 bits (136), Expect = 3e-23
Identities = 123/157 (78%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 83387 TTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCT 83446
||| |||||| ||||||||||| || ||||| || ||||| ||||||| ||| | |
Sbjct 2044 TTTACCTGGTAGCCGAACTGGTTGCAGGGGAAGCCCAGCACCACCAGCCGCCGCGGG--T 2101
Query 83447 AGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGAC 83506
|| || |||||||| ||| | ||| ||||| ||||| |||||| | |||||||| |||
Sbjct 2102 AG-CGTGCCTGCAGCTGGTTGAGCTGGGTGTAGTCCCGCACCGTGGTGCCTCAGAGCGAC 2160
Query 83507 GCTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543
|| |||||||||||||| | ||||| || || ||||
Sbjct 2161 GCCACGTTCTCGATGAGGACCACCCGCCCGCGGAAGA 2197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608704065027440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |