Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq114 163 3e-35 seq89 156 4e-33 seq2 129 6e-25 >seq114 Length=3819349 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || ||||| | || ||||| ||||||||| | || || ||| ||| Sbjct 3316215 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 3316156 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| || || | |||||||| ||||| ||| | || ||| Sbjct 3316155 GACACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGATCAG 3316096 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 3316095 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 3316036 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| |||||||| ||| ||||| | ||||| ||| Sbjct 3316035 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTCAGGGGTGGC 3315988 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 3316443 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 3316384 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | |||||||| ||||| || | || || Sbjct 3316383 GACACCATTGAGAACG-TGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCA 3316325 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || ||||| |||||||| || | ||||||||| |||||||| Sbjct 3316324 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 3316265 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| |||| |||||||| ||| ||||| ||||||| || Sbjct 3316264 CATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGG 3316217 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 || ||||| | || |||| || ||||| |||||||| || | |||||||| ||| Sbjct 3316557 GATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGAC 3316498 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||||||||| |||| |||||| | ||| ||||| ||||||| || Sbjct 3316497 TACAACATACAGAAGGAGTCCACCCTGCATTTGGTGCTGCGCCTGAGGGGAGG 3316445 >seq89 Length=7284382 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || ||||||||||||||| | || || ||| || Sbjct 2822654 AACATGCAGATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAACCC 2822595 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | ||||| |||||||| ||| | || Sbjct 2822594 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGAT 2822535 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | || |||| || ||||| |||||||| || | ||||||||| |||||| Sbjct 2822534 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 2822475 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||||| |||| || ||||| || ||||| |||| || ||| Sbjct 2822474 AACATCCAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTGAGAGGAGGC 2822424 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||| ||| | || || ||| ||| Sbjct 2822195 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATAACCTTGGAGGTGGAACCCAGT 2822136 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| |||||||| ||| | || ||| Sbjct 2822135 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAG 2822076 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| |||| |||||| || ||||||||| Sbjct 2822075 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACTCTGTCTGACTACAAC 2822016 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || ||| ||||| ||||||| || Sbjct 2822015 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGTGG 2821969 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | ||||| || |||||||| | || || || ||| Sbjct 2822423 ATGCAGATCTTTGTGAAGACCTTGACGGGTAAGACCATCACTCTGGAGGTTGAGACCAGT 2822364 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| |||||||| ||| | || ||| Sbjct 2822363 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAG 2822304 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| |||||||| |||| ||||| || ||||||||| Sbjct 2822303 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACTCTGTCTGACTACAAC 2822244 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || ||| ||||| ||||||| || Sbjct 2822243 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 2822197 >seq2 Length=38276455 Score = 129 bits (142), Expect = 6e-25 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || ||||||||||| ||||||||||| |||||||| |||||||| || || |||| ||| Sbjct 2053557 GAACCGCTGCTGCGGGAGAACCCCCGGCGGTTCGTCATTTTCCCTATCCAGTACCATGAC 2053498 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || ||||| |||||||| ||||||||||| || |||||||| | ||||||||| Sbjct 2053497 ATCTGGCGGATGTACAAGAAGGCCGAGGCTTCCTTCTGGACGGCGGAGGAGGTG 2053444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515140719235360