Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 >seq1 Length=54145758 Score = 104 bits (114), Expect = 2e-17 Identities = 112/148 (76%), Gaps = 8/148 (5%) Strand=Plus/Minus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||||||||| |||||||| ||||| |||||||| ||||| | ||| || |||||| Sbjct 34287155 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAGTCCCCCTCTTCT 34287096 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517 || || || || ||||||| |||| || |||||||| ||||||||||| Sbjct 34287095 CTGGTGCAAAACCCCTGCTTATC----CAGGAACTCACGTGATCCATTGGCATCCCAAAT 34287040 Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545 | |||||| ||| | ||||||||| Sbjct 34287039 CTTCACACCTTTTGCAGAGAGCTCTTTG 34287012 Score = 100 bits (110), Expect = 2e-16 Identities = 131/180 (73%), Gaps = 1/180 (1%) Strand=Plus/Minus Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176 ||||||||||| ||||| | || | || |||||||| ||||| || |||||||| ||| Sbjct 34290828 GTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCT 34290769 Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236 ||||||||||| | || || ||||| | ||||| || || | |||| ||||| Sbjct 34290768 AGTCCCATATCTCCAGACCTCTGATACAGTTGACAAGACAGTTCGCCATTTAGAACATAG 34290709 Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAA 97296 ||||| | | |||| || || ||||| ||||| | || |||||||| ||| ||| Sbjct 34290708 AACTGGCAAAGAGCATGGCAAGGTGGCAAGGCCATCAGAGAAATATCTAAGA-ATTACAA 34290650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346732496724020