Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq1 104 2e-17
>seq1
Length=54145758
Score = 104 bits (114), Expect = 2e-17
Identities = 112/148 (76%), Gaps = 8/148 (5%)
Strand=Plus/Minus
Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461
|||||||||||||| |||||||| ||||| |||||||| ||||| | ||| || ||||||
Sbjct 34287155 TATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAGTCCCCCTCTTCT 34287096
Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517
|| || || || ||||||| |||| || |||||||| |||||||||||
Sbjct 34287095 CTGGTGCAAAACCCCTGCTTATC----CAGGAACTCACGTGATCCATTGGCATCCCAAAT 34287040
Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545
| |||||| ||| | |||||||||
Sbjct 34287039 CTTCACACCTTTTGCAGAGAGCTCTTTG 34287012
Score = 100 bits (110), Expect = 2e-16
Identities = 131/180 (73%), Gaps = 1/180 (1%)
Strand=Plus/Minus
Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176
||||||||||| ||||| | || | || |||||||| ||||| || |||||||| |||
Sbjct 34290828 GTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCT 34290769
Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAA 97236
||||||||||| | || || ||||| | ||||| || || | |||| |||||
Sbjct 34290768 AGTCCCATATCTCCAGACCTCTGATACAGTTGACAAGACAGTTCGCCATTTAGAACATAG 34290709
Query 97237 AACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAA 97296
||||| | | |||| || || ||||| ||||| | || |||||||| ||| |||
Sbjct 34290708 AACTGGCAAAGAGCATGGCAAGGTGGCAAGGCCATCAGAGAAATATCTAAGA-ATTACAA 34290650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346732496724020
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |