Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq2 129 1e-24 >seq2 Length=38276455 Score = 129 bits (142), Expect = 1e-24 Identities = 110/133 (83%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||||||||||||| | ||||| ||||| |||||||||||||||| ||||| || Sbjct 18723411 GCTTTTTTTGGAGCTCAGATGAATTCATTTATTCATGTTATTATGTACATGTATTACGGA 18723352 Query 52117 ATGGCCGCTTGTGGTCCTAT-GTTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | || || ||||| |||| ||||||||| ||||| ||||||||||| || | ||||| Sbjct 18723351 TTAGCTGCCTGTGGCCCTAAAGTTCAGAAA-TATCTGTGGTGGAAACGGTACTTGACTAT 18723293 Query 52176 AATGCAGTTGGTA 52188 | ||||||||||| Sbjct 18723292 ATTGCAGTTGGTA 18723280 Score = 104 bits (114), Expect = 4e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | |||| || || || || |||| ||||| || ||||| || || Sbjct 18722577 GGTGCAGTTCCATGTGACTATTGGCCACACAGCATTGTCTATTTATATTGATTGTCCTTT 18722518 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||| |||||||| || ||| || ||| ||||| |||| | ||||| || ||||||| Sbjct 18722517 TCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCTTGTTTGG 18722458 Query 52305 TAACTTCTATTTTAGAACATACAAG 52329 ||||||||| | | | ||||| ||| Sbjct 18722457 TAACTTCTACTATCGGACATATAAG 18722433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923056174047440