Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_002229.3 Length=177874 Score E Sequences producing significant alignments: (Bits) Value seq64 744 0.0 seq39 109 6e-19 seq34 89.7 6e-13 >seq64 Length=8029390 Score = 744 bits (824), Expect = 0.0 Identities = 715/932 (77%), Gaps = 125/932 (13%) Strand=Plus/Plus Query 139376 CGCCCAGCGGGCACCACCTGCGCAGGGACCGGGCTCGAGCGCCC----ACCTC--CGCGG 139429 ||||| |||||| ||||||||| ||||| ||| ||| | ||| ||||| ||||| Sbjct 3968404 CGCCCGGCGGGCCGCACCTGCGCGCGGACCCGGCCCGACCTCCCTCCCACCTCGGCGCGG 3968463 Query 139430 GG-GGCCCGTTCGGTCTACTCACAGAGCCCCGCGCGCGGCTCAACGGCTCCAACGGTCGT 139488 || ||||| ||||| ||| | | |||| |||||| |||||||||| Sbjct 3968464 GGCGGCCCCGAGGGTCTCCTCGCGGCGCCC------------AACGGCCCCAACGGTCGC 3968511 Query 139489 gcgcgcggggccgcgcgtgtgggagcgacgccgtccgcgcgccccacggcgcaggggggc 139548 ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| || Sbjct 3968512 TCGCGCGGGGCCGCGCGTGTCGGAGCGACGCCGTCCGCGCGCCCCACGGCGCGGGGGAGC 3968571 Query 139549 gcgggggttgccccgggggcgccgctcccgtgttgctctgctgggggcgcggggccgcgc 139608 ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 3968572 GCGGGGGTTTCCCCGGGGGCGCCGCTCCCGT-TTGCTCTGCTGGGGGCGCGGGGCCGCGC 3968630 Query 139609 gcCGCATCTCCCGGGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGC 139668 |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3968631 GCCGCACCTCCCGCGCGCCGCCGAGGCTGACAGAGGCGAACTCTTCGCGGCGGCAATGGC 3968690 Query 139669 GGGTGCCGGCCGACCGCGGCC-TGCGGGCGAGGACCCCAGGGCGGATGGGGGCGAGAGGA 139727 ||||||||||||||||||||| ||| ||| |||||||||||||||| |||||||| ||| Sbjct 3968691 GGGTGCCGGCCGACCGCGGCCACGCGAGCGGGGACCCCAGGGCGGATCGGGGCGAGCGGA 3968750 Query 139728 CCCCTCGCTGACGtttttttttGTTTGCCGTGGAGCCCCTTTCGGTCCTTTCTCCCG-CG 139786 ||||||||||||| ||| ||| || |||||| || Sbjct 3968751 CCCCTCGCTGACG------------NNNNNNNNNNCCC----CGGCCC--CCTCCCGCCG 3968792 Query 139787 TCCGCCCCANNNNNNNNNNNNNNNNNNNNCCCCTGGGGCGGCTCCCCTAGCCCGCTGAAA 139846 ||||| | ||||||||||||||||||| ||||||||||| Sbjct 3968793 CCCGCCTC---------------------CCCCTGGGGCGGCTCCCCTCGCCCGCTGAAA 3968831 Query 139847 GTCAGCGAGT-AAACA----GCGGGCGGAGGGAGCGCGGCGACAG-TACCATCAATACCT 139900 |||||||||| ||||| ||||||||||||||||||||||||| ||||||||| || Sbjct 3968832 GTCAGCGAGTAAAACAGCGGGCGGGCGGAGGGAGCGCGGCGACAGCCACCATCAATTCCC 3968891 Query 139901 CCGATTAGGGTTAGACACAGCGGAGCCTTCCACCCGCCACGTGTGCCGGGGGAACCCCGC 139960 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 3968892 CCGATTAGGGTTAGGCACAGCGGAGCCTTCCACCCGCCACGCGTGCCGGGGGAACCCCGC 3968951 Query 139961 GTGGGGCTCTTGTAGCTTCCTCCGCCTACGCCCACCGCGCGCCTATTGGCCGGGCTGTAC 140020 |||||||||||||||| |||||||||||||||| | | ||||| |||||| |||||| || Sbjct 3968952 GTGGGGCTCTTGTAGCCTCCTCCGCCTACGCCCGCAGGGCGCCCATTGGCTGGGCTGCAC 3969011 Query 140021 GCTGCCGCGTAGCTATTGGCGGCGGGGAGGAGAGCGAGCAGAGAGGGGCCGG-TGCGGGA 140079 |||||||| || |||||| ||| |||| ||| | || ||||| || ||| |||||| Sbjct 3969012 GCTGCCGCCCCGCCATTGGCAGCGAGGAGCGGAGAGGGCGGAGAGAGGACGGCGGCGGGA 3969071 Query 140080 GTTTGGAACTCCGCGGTCATTCATCTCCC------------------------------G 140109 ||||||||||||||| |||||| |||||| | Sbjct 3969072 GTTTGGAACTCCGCGCTCATTCGTCTCCCGTCGCACCGTGTGCCGCCGGGCCGGGCCTGG 3969131 Query 140110 CCACGCCCCATGCA------------CGTGCCCCGCCCCTTCCTGTGGGCCGGGGTCTGC 140157 || |||||| ||| || |||||||| ||||||||||||||||| |||| Sbjct 3969132 CCGCGCCCCCCGCACGCGCCCCCGCGCGCGCCCCGCCTCTTCCTGTGGGCCGGGGGCTGC 3969191 Query 140158 GGGATCGGATCCGGGGGCTGCGAGATGCGGGCTGAGCTTTCCCGCCCTGGATTTAGCGCA 140217 ||| || |||||| |||||||||||| | |||| |||||| ||| | Sbjct 3969192 GGGGTCCGATCCG---------------GGGCTGAGCTTTACGGCCCCGGATTTCGCGAA 3969236 Query 140218 GAACCTCGTTAAAACATGTCCTGTATCTACCT 140249 |||| ||||||||||| ||| |||||| ||| Sbjct 3969237 GAACGTCGTTAAAACACGTCTCGTATCTGCCT 3969268 Score = 740 bits (820), Expect = 0.0 Identities = 713/931 (77%), Gaps = 123/931 (13%) Strand=Plus/Minus Query 1371 AGGTAGATACAGGACATGTTTTAACGAGGTTCTGCGCTAAATCCAGGGCGGGAAAGCTCA 1430 ||| |||||| ||| ||||||||||| ||||| ||| |||||| |||| | |||||||| Sbjct 3969268 AGGCAGATACGAGACGTGTTTTAACGACGTTCTTCGCGAAATCCGGGGCCGTAAAGCTCA 3969209 Query 1431 GCCCGCATCTCGCAGCCCCCGGATCCGATCCCGCAGACCCCGGCCCACAGGAAGGGGCGG 1490 |||| |||||| || ||||||| ||||||||||||||||| ||||| Sbjct 3969208 GCCC---------------CGGATCGGACCCCGCAGCCCCCGGCCCACAGGAAGAGGCGG 3969164 Query 1491 GGCACG------------TGCATGGGGCGTGGC--------------------------- 1511 ||| || ||| |||||| ||| Sbjct 3969163 GGCGCGCGCGGGGGCGCGTGCGGGGGGCGCGGCCAGGCCCGGCCCGGCGGCACACGGTGC 3969104 Query 1512 ---GGGAGATGAATGACCGCGGAGTTCCAAACTCCCGCA-CCGGCCCCTCTCTGCTCGCT 1567 |||||| |||||| ||||||||||||||||||||| ||| || ||||| || | || Sbjct 3969103 GACGGGAGACGAATGAGCGCGGAGTTCCAAACTCCCGCCGCCGTCCTCTCTCCGCCCTCT 3969044 Query 1568 CTCCTCCCCGCCGCCAATAGCTACGCGGCAGCGTACAGCCCGGCCAATAGGCGCGCGGTG 1627 | |||| ||| |||||| || |||||||||| |||||| |||||| ||||| | | | Sbjct 3969043 CCGCTCCTCGCTGCCAATGGCGGGGCGGCAGCGTGCAGCCCAGCCAATGGGCGCCCTGCG 3968984 Query 1628 GGCGTAGGCGGAGGAAGCTACAAGAGCCCCACGCGGGGTTCCCCCGGCACACGTGGCGGG 1687 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 3968983 GGCGTAGGCGGAGGAGGCTACAAGAGCCCCACGCGGGGTTCCCCCGGCACGCGTGGCGGG 3968924 Query 1688 TGGAAGGCTCCGCTGTGTCTAACCCTAATCGGAGGTATTGATGGTA-CTGTCGCCGCGCT 1746 ||||||||||||||||| |||||||||||||| || ||||||||| ||||||||||||| Sbjct 3968923 TGGAAGGCTCCGCTGTGCCTAACCCTAATCGGGGGAATTGATGGTGGCTGTCGCCGCGCT 3968864 Query 1747 CCCTCCGCCCGC----TGTTT-ACTCGCTGACTTTCAGCGGGCTAGGGGAGCCGCCCCAG 1801 |||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 3968863 CCCTCCGCCCGCCCGCTGTTTTACTCGCTGACTTTCAGCGGGCGAGGGGAGCCGCCCCAG 3968804 Query 1802 GGGGCGCCNNNNNNNNNNNNNNNNNNNNCGGACGCGGGAGAAAGGACCGAAAGGGGCTCC 1861 |||| | | || ||||||| || ||| ||| Sbjct 3968803 GGGGAGGCG--------------------GGCGGCGGGAGG--GGGCCG----GGGNNNN 3968770 Query 1862 ACGGCAAACaaaaaaaaaCGTCAGCGAGGGGTCCTCTCGCCCCCATCCGCCCTGGGGTCC 1921 |||||||||||||||| |||||||| |||||||||||||||| Sbjct 3968769 NNNNNN------------CGTCAGCGAGGGGTCCGCTCGCCCCGATCCGCCCTGGGGTCC 3968722 Query 1922 TCGCCCGCA-GGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAGAGTTCGCCTCT 1980 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3968721 CCGCTCGCGTGGCCGCGGTCGGCCGGCACCCGCCATTGCCGCCGCGAAGAGTTCGCCTCT 3968662 Query 1981 GTCAGCCTCGGCGGCGCCCGGGAGATGCGgcgcgcggccccgcgcccccagcagagcaac 2040 ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 3968661 GTCAGCCTCGGCGGCGCGCGGGAGGTGCGGCGCGCGGCCCCGCGCCCCCAGCAGAGCAA- 3968603 Query 2041 acgggagcggcgcccccggggcaacccccgcgcccccctgcgccgtggggcgcgcggacg 2100 ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||| Sbjct 3968602 ACGGGAGCGGCGCCCCCGGGGAAACCCCCGCGCTCCCCCGCGCCGTGGGGCGCGCGGACG 3968543 Query 2101 gcgtcgctcccacacgcgcggccccgcgcgcACGACCGTTGGAGCCGTTGAGCCGCGCGC 2160 |||||||||| ||||||||||||||||||| |||||||||| |||||| Sbjct 3968542 GCGTCGCTCCGACACGCGCGGCCCCGCGCGAGCGACCGTTGGGGCCGTT----------- 3968494 Query 2161 GGGGCTCTGTGAGTAGACCGAACGGGCC-CCCCGCG--GAGGT----GGGCGCTCGAGCC 2213 |||| | | ||| ||||| ||||| ||||||| ||||| ||| | ||| ||| Sbjct 3968493 -GGGCGCCGCGAGGAGACCCTCGGGGCCGCCCCGCGCCGAGGTGGGAGGGAGGTCGGGCC 3968435 Query 2214 CGGTCCCTGCGCAGGTGGTGCCCGCTGGGCG 2244 ||||| ||||||||| |||||| ||||| Sbjct 3968434 GGGTCCGCGCGCAGGTGCGGCCCGCCGGGCG 3968404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/183 (71%), Gaps = 5/183 (3%) Strand=Plus/Plus Query 138943 TCTACCCGCAGGACTCGCACATTTCTGAGGGTATCGGACTTCTCTATCCCCACATATTCT 139002 || |||||| |||| |||| | || ||| ||||||||||||| ||| |||| | Sbjct 3967892 TCGACCCGCCGGACCGGCACGTCTCCGAGCATATCGGACTTCTCCATCTCCACGT----G 3967947 Query 139003 AGCAACGGTTCTCCATCGCGCAATTAAAGCACGATTAAGTACCCCAAGTTCACTGACTCT 139062 || || | ||| ||| |||||||| || |||||| | |||||||||| || || Sbjct 3967948 GGCCGTGGCTTTCCGCCGCCCAATTAAAACATAATTAAGCA-TCCAAGTTCACCGATCCT 3968006 Query 139063 TCGTGCAAAAGGGGGAAAAAAGAAAGCCGAGACCACAAGATGGCACTGACCCCGTGCACG 139122 |||||| || ||| |||| |||||||| ||| |||||||| | || | ||||| Sbjct 3968007 TCGTGCGGAACGGGATAAAAGTGAAGCCGAGCCCAGCAGATGGCAGCGGCCGCACGCACG 3968066 Query 139123 GGG 139125 || Sbjct 3968067 TGG 3968069 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/183 (71%), Gaps = 5/183 (3%) Strand=Plus/Minus Query 2495 CCCCGTGCACGGGGTCAGTGCCATCTTGTGGTCTCGGCTTTCTTTTTTCCCCCTTTTGCA 2554 || ||||| | || | |||||||| ||| |||||||| |||| ||| || ||| Sbjct 3968069 CCACGTGCGTGCGGCCGCTGCCATCTGCTGGGCTCGGCTTCACTTTTATCCCGTTCCGCA 3968010 Query 2555 CGAAGAGTCAGTGAACTTGGGGTACTTAATCGTGCTTTAATTGCGCGATGGAGAACCGTT 2614 ||||| || |||||||||| | |||||| || |||||||| ||| ||| | || Sbjct 3968009 CGAAGGATCGGTGAACTTGGA-TGCTTAATTATGTTTTAATTGGGCGGCGGAAAGCCACG 3967951 Query 2615 GCTAGAATATGTGGGGATAGAGAAGTCCGATACCCTCAGAAATGTGCGAGTCCTGCGGGT 2674 || | |||| ||| ||||||||||||| ||| || | |||| |||| |||||| Sbjct 3967950 GCCC----ACGTGGAGATGGAGAAGTCCGATATGCTCGGAGACGTGCCGGTCCGGCGGGT 3967895 Query 2675 AGA 2677 || Sbjct 3967894 CGA 3967892 >seq39 Length=4574606 Score = 109 bits (120), Expect = 6e-19 Identities = 171/245 (70%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 153649 CTTTGAAAAGTGTCCCGATTTTTGTCTGAGAATTGGGGGTTTGGAGGCCAGCTTTCATAA 153708 |||||||||| ||| | || | ||| | | ||||| |||||| || ||| | | Sbjct 4473135 CTTTGAAAAGCAGCCCCAGTTCCGCCTGCGGGTCGGGGGCCTGGAGGGCACCTTCTACGA 4473076 Query 153709 AGGGCAGGAGGAGCTGTTAGAGTATTGTGAAGCACTTTATTTACCACAACCTGTTAAGAT 153768 |||||||||||||||| ||||| ||||| || || || | || || | ||||| Sbjct 4473075 AGGGCAGGAGGAGCTGAAGGAGTACTGTGAGGCGCTCTACCTGCCGCAGTCCACCAAGAT 4473016 Query 153769 GGAAATAGTAGGCATTGTAGACGATGTGCCATGTCTGGCAACGGGGATGCAATTACTCAT 153828 ||| | || |||| || || || ||||| |||||||| | |||| ||| | |||| Sbjct 4473015 GGAGGTGGTGGGCACGGTGGATGACGTGCCCTGTCTGGCCATGGGGCAGCAGCTCATCAT 4472956 Query 153829 TCTTGTTGCCGAGGGGGGAGAGGTATATGCCTATGAAGAAGATACTCTGCATAAGTTAGC 153888 || ||||||||| | || ||||| || || || || || || || || || || | || Sbjct 4472955 CCTCGTTGCCGAGAGCGGGGAGGTGTACGCTTACGAGGAGGACACGCTACACAAAGTTGC 4472896 Query 153889 CACGA 153893 || || Sbjct 4472895 CAAGA 4472891 >seq34 Length=12402863 Score = 89.7 bits (98), Expect = 6e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 3175 ACTTACATAATTTCAGTCCTCCTGCAGTGTATACCCGGTGGTATCACGTCAACAGCGATA 3234 |||||||| || || |||||| |||||| |||| |||||| |||| |||| |||| Sbjct 241785 ACTTACATGATCTCCTTCCTCCGGCAGTGAATACTCGGTGGCGTCACATCAATGGCGAGG 241844 Query 3235 ATAGGCCCCAAGCCAGTAGGCCGATTAGTGACTTTCACGCACTTGCACCTCTTG-TCGAC 3293 || |||||| ||| | | | ||| ||||| || ||||||||||||||| | | | Sbjct 241845 ATGAGCCCCAGGCCGATGACCTGGGCAGTCACTTTGACACACTTGCACCTCTTGTTGGTC 241904 Query 3294 AGCGAGACTCTCCAGTGA 3311 ||| || ||||||||||| Sbjct 241905 AGC-AGGCTCTCCAGTGA 241921 Score = 89.7 bits (98), Expect = 6e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 138309 TCACTGGAGAGTCTCGCTGTCGA-CAAGAGGTGCAAGTGCGTGAAAGTCACTAATCGGCC 138367 ||||||||||| || |||| | | ||||||||||||||| || ||||| ||| | | Sbjct 241921 TCACTGGAGAGCCT-GCTGACCAACAAGAGGTGCAAGTGTGTCAAAGTGACTGCCCAGGT 241863 Query 138368 TACTGGCTTGGGGCCTATTATCGCTGTTGACGTGATACCACCGGGTATACACTGCAGGAG 138427 | ||| |||||| || |||| |||| |||| |||||| |||| |||||| |||| Sbjct 241862 CATCGGCCTGGGGCTCATCCTCGCCATTGATGTGACGCCACCGAGTATTCACTGCCGGAG 241803 Query 138428 GACTGAAATTATGTAAGT 138445 || || || |||||||| Sbjct 241802 GAAGGAGATCATGTAAGT 241785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568982116595040