Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_002641.1
Length=159160
Score E
Sequences producing significant alignments: (Bits) Value
seq31 318 6e-82
>seq31
Length=16788233
Score = 318 bits (352), Expect = 6e-82
Identities = 322/422 (76%), Gaps = 1/422 (0%)
Strand=Plus/Plus
Query 125092 GCCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCC 125151
||||| ||| ||| |||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 10541125 GCCCG-GCCCCGCTCACCCATCCGCCGTGCTCCCGCAGCCACTCGCCCTGCTCCTCGGCC 10541183
Query 125152 AGGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTAC 125211
||||||||||||||||| |||||||||||||| ||||||||||| |||||| | ||| |
Sbjct 10541184 AGGTACGCGGCCAGCGCGGCGGCCAAGCGGCTCGGCCCTTCCTCGCAGCCGCTCTCGGCC 10541243
Query 125212 AGCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGAAG 125271
||||||| ||||||| |||| ||| || | | ||||| || |||||||||| |
Sbjct 10541244 AGCGCCGCCGCCAGCGTGCCGGCGAACACCACGAGAGCCAGCAGCCGGCCCCAGTTGAGG 10541303
Query 125272 CCGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCGTG 125331
|||| ||| | || | | | |||| || ||||| || | ||| || |||
Sbjct 10541304 CCGCCGTCGGCCTCCAGCTGCGCCGCCACTCTCCGCAGCAGCGCCGCCGCCTCCCGCGGC 10541363
Query 125332 CCGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCG 125391
|| | | ||| | ||||||||||||||| |||||||||| |||||| ||||||||||||
Sbjct 10541364 TCGGCCCGCGCCAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCTCGGCGCTCCAGCTCG 10541423
Query 125392 GCCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGCAG 125451
|||||||| ||||| || | || || ||| || | | |||| |
Sbjct 10541424 GCCGCCGCCCGCCGCAGCTCGGCCGCCGTGGCGCTGGGAGGCAGCGCGGCGCCGCCGGCG 10541483
Query 125452 CAGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATG 125511
| |||||||||||||||||||||||||| |||||| || |||||||| ||| | | ||||
Sbjct 10541484 CGGTGCTGGAAGTAATCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAGAGAGCCCGGCATG 10541543
Query 125512 GC 125513
||
Sbjct 10541544 GC 10541545
Score = 315 bits (348), Expect = 7e-81
Identities = 321/422 (76%), Gaps = 1/422 (0%)
Strand=Plus/Minus
Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142
|||||| | | ||| |||||||| || |||||| ||||||||||||||||||||||||||
Sbjct 10541545 GCCATGCCGGGCTCTCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGATTACTTCCAGCAC 10541486
Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202
|| |||| | | || ||| || || | |||||||| ||||||||||| ||
Sbjct 10541485 CGCGCCGGCGGCGCCGCGCTGCCTCCCAGCGCCACGGCGGCCGAGCTGCGGCGGGCGGCG 10541426
Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262
||||| |||||| |||||||||| ||||||||||||||| | ||| | | |
Sbjct 10541425 GCCGAGCTGGAGCGCCGAGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGGCC 10541366
Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322
| ||| || ||| | || ||||| || |||| | | | || | ||| ||
Sbjct 10541365 GAGCCGCGGGAGGCGGCGGCGCTGCTGCGGAGAGTGGCGGCGCAGCTGGAGGCCGACGGC 10541306
Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382
||| |||||||||| || ||||| | | || ||| |||| ||||||| |||||
Sbjct 10541305 GGCCTCAACTGGGGCCGGCTGCTGGCTCTCGTGGTGTTCGCCGGCACGCTGGCGGCGGCG 10541246
Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442
||| ||| | |||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 10541245 CTGGCCGAGAGCGGCTGCGAGGAAGGGCCGAGCCGCTTGGCCGCCGCGCTGGCCGCGTAC 10541186
Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGG 157502
|||||||| ||||||||||||||| |||||||||||||||||||||| ||| ||| |||
Sbjct 10541185 CTGGCCGAGGAGCAGGGCGAGTGGCTGCGGGAGCACGGCGGATGGGTGAGCGGGGC-CGG 10541127
Query 157503 GC 157504
||
Sbjct 10541126 GC 10541125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 509106438547200
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