Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_002641.1 Length=159160 Score E Sequences producing significant alignments: (Bits) Value seq31 318 6e-82 >seq31 Length=16788233 Score = 318 bits (352), Expect = 6e-82 Identities = 322/422 (76%), Gaps = 1/422 (0%) Strand=Plus/Plus Query 125092 GCCCGTGCCGTGCTTACCCATCCGCCGTGCTCCCGCAACCACTCGCCCTGCTCTTCGGCC 125151 ||||| ||| ||| |||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 10541125 GCCCG-GCCCCGCTCACCCATCCGCCGTGCTCCCGCAGCCACTCGCCCTGCTCCTCGGCC 10541183 Query 125152 AGGTACGCGGCCAGCGCTGCGGCCAAGCGGCTTGGCCCTTCCTCACAGCCGTTTTCGTAC 125211 ||||||||||||||||| |||||||||||||| ||||||||||| |||||| | ||| | Sbjct 10541184 AGGTACGCGGCCAGCGCGGCGGCCAAGCGGCTCGGCCCTTCCTCGCAGCCGCTCTCGGCC 10541243 Query 125212 AGCGCCGTTGCCAGCGAGCCGCCGAGGACTATGGTCGCCAGGCATCGACCCCAGTTGAAG 125271 ||||||| ||||||| |||| ||| || | | ||||| || |||||||||| | Sbjct 10541244 AGCGCCGCCGCCAGCGTGCCGGCGAACACCACGAGAGCCAGCAGCCGGCCCCAGTTGAGG 10541303 Query 125272 CCGCTTCCGGAGTTCAATTCAGACACCACACTTTGCAGCGCCGACAACGCTGCCTGCGTG 125331 |||| ||| | || | | | |||| || ||||| || | ||| || ||| Sbjct 10541304 CCGCCGTCGGCCTCCAGCTGCGCCGCCACTCTCCGCAGCAGCGCCGCCGCCTCCCGCGGC 10541363 Query 125332 CCGCCGCTCGCTAACGGCGCGCAGGAGCGAAAGAAGGGCCTCTCTCGCCGCTCCAGCTCG 125391 || | | ||| | ||||||||||||||| |||||||||| |||||| |||||||||||| Sbjct 10541364 TCGGCCCGCGCCAGCGGCGCGCAGGAGCGGAAGAAGGGCCGCTCTCGGCGCTCCAGCTCG 10541423 Query 125392 GCCGCCGCTCGCCGNNNNNNNNNNNNNGTAGGACTCGGCGGCGGCCCTTCCTTGCCGCAG 125451 |||||||| ||||| || | || || ||| || | | |||| | Sbjct 10541424 GCCGCCGCCCGCCGCAGCTCGGCCGCCGTGGCGCTGGGAGGCAGCGCGGCGCCGCCGGCG 10541483 Query 125452 CAGTGCTGGAAGTAATCCTCCAGCAGCAACGCCGTTTCTTCCTTCAGGGAGTCAGCCATG 125511 | |||||||||||||||||||||||||| |||||| || |||||||| ||| | | |||| Sbjct 10541484 CGGTGCTGGAAGTAATCCTCCAGCAGCAGCGCCGTCTCCTCCTTCAGAGAGCCCGGCATG 10541543 Query 125512 GC 125513 || Sbjct 10541544 GC 10541545 Score = 315 bits (348), Expect = 7e-81 Identities = 321/422 (76%), Gaps = 1/422 (0%) Strand=Plus/Minus Query 157083 GCCATGGCTGACTCCCTGAAGGAAGAAACGGCGTTGCTGCTGGAGGATTACTTCCAGCAC 157142 |||||| | | ||| |||||||| || |||||| |||||||||||||||||||||||||| Sbjct 10541545 GCCATGCCGGGCTCTCTGAAGGAGGAGACGGCGCTGCTGCTGGAGGATTACTTCCAGCAC 10541486 Query 157143 TGCTGCGGCAAGGAAGGGCCGCCGCCGAGTCCTACGGCGGCAGAGCTGCGGCGAGCNNNN 157202 || |||| | | || ||| || || | |||||||| ||||||||||| || Sbjct 10541485 CGCGCCGGCGGCGCCGCGCTGCCTCCCAGCGCCACGGCGGCCGAGCTGCGGCGGGCGGCG 10541426 Query 157203 NNNNNNNNNGAGCGGCGAGAGAGGCCCTTCTTTCGCTCCTGCGCGCCGTTAGCGAGCGGC 157262 ||||| |||||| |||||||||| ||||||||||||||| | ||| | | | Sbjct 10541425 GCCGAGCTGGAGCGCCGAGAGCGGCCCTTCTTCCGCTCCTGCGCGCCGCTGGCGCGGGCC 10541366 Query 157263 GGCACGCAGGCAGCGTTGTCGGCGCTGCAAAGTGTGGTGTCTGAATTGAACTCCGGAAGC 157322 | ||| || ||| | || ||||| || |||| | | | || | ||| || Sbjct 10541365 GAGCCGCGGGAGGCGGCGGCGCTGCTGCGGAGAGTGGCGGCGCAGCTGGAGGCCGACGGC 10541306 Query 157323 GGCTTCAACTGGGGTCGATGCCTGGCGACCATAGTCCTCGGCGGCTCGCTGGCAACGGCG 157382 ||| |||||||||| || ||||| | | || ||| |||| ||||||| ||||| Sbjct 10541305 GGCCTCAACTGGGGCCGGCTGCTGGCTCTCGTGGTGTTCGCCGGCACGCTGGCGGCGGCG 10541246 Query 157383 CTGTACGAAAACGGCTGTGAGGAAGGGCCAAGCCGCTTGGCCGCAGCGCTGGCCGCGTAC 157442 ||| ||| | |||||| ||||||||||| |||||||||||||| ||||||||||||||| Sbjct 10541245 CTGGCCGAGAGCGGCTGCGAGGAAGGGCCGAGCCGCTTGGCCGCCGCGCTGGCCGCGTAC 10541186 Query 157443 CTGGCCGAAGAGCAGGGCGAGTGGTTGCGGGAGCACGGCGGATGGGTAAGCACGGCACGG 157502 |||||||| ||||||||||||||| |||||||||||||||||||||| ||| ||| ||| Sbjct 10541185 CTGGCCGAGGAGCAGGGCGAGTGGCTGCGGGAGCACGGCGGATGGGTGAGCGGGGC-CGG 10541127 Query 157503 GC 157504 || Sbjct 10541126 GC 10541125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 509106438547200