Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq1 114 1e-20
seq2 98.7 9e-16
>seq1
Length=54145758
Score = 114 bits (126), Expect = 1e-20
Identities = 114/148 (77%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 16245 CACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTA 16304
|||||| || | | || || || || || | || || ||||| || | || |||||||
Sbjct 8045445 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTA 8045386
Query 16305 GTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAA 16364
| || | || || | |||||||||||| ||||||||||| |||||||| || |||||||
Sbjct 8045385 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 8045326
Query 16365 CTGCGGCAAATGCAACCAATCGCTCACC 16392
|||| ||||| ||||||| | ||||||
Sbjct 8045325 CTGCAGCAAAGGCAACCACCCTCTCACC 8045298
Score = 102 bits (112), Expect = 8e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947
||||||| ||| |||| || ||||| || || | | || |||||| | | ||
Sbjct 8049576 AAAAATCTGCATCCAGAGTGAAAACATTGTCCATTGTTTCTGCCATAACAGCAAAACGTT 8049517
Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007
|||| || ||| | ||| ||||||||||||||||||||||| | |||||||| ||||
Sbjct 8049516 GATACTCCGAAACCCGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATTCTCCA 8049457
Query 16008 TAAAATCAAAAGGATTTTTTG 16028
| |||||||||||||||| ||
Sbjct 8049456 TGAAATCAAAAGGATTTTCTG 8049436
>seq2
Length=38276455
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || ||||| || | ||| || ||||| || || || ||||||| |||| ||| ||
Sbjct 2050877 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 2050936
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| |||||| || | ||||| || ||||||||||| || ||||| ||||| ||||||||
Sbjct 2050937 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 2050996
Query 16379 ACCAATCGCTCACC 16392
|| | ||| || ||
Sbjct 2050997 ACTACTCGTTCTCC 2051010
Score = 91.5 bits (100), Expect = 1e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 15926 TTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTT 15985
|||||||| ||| ||| | |||||||||| |||| ||| ||||||||||| || ||
Sbjct 2049587 TTTGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTG 2049646
Query 15986 CCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATT 16023
||||| | || || |||||||| ||||||||||||||
Sbjct 2049647 CCTTCCAGAGAGATGTTTTCCATGAAATCAAAAGGATT 2049684
Score = 82.4 bits (90), Expect = 7e-11
Identities = 80/103 (78%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106
|||||| |||||||| | | || || ||||| ||||| ||||||||||||||| |
Sbjct 2050101 ATCCCAGTTCCAACATCAGCCGGTCTGCTACAAACTCTATGTACTGTTTCATTAAAGTGC 2050160
Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149
||||||| || || || |||||||| | ||| ||||| || ||
Sbjct 2050161 AGTTCATGCCAATCAACTTAACAGGCAGTGCCTCTGTCAAGAA 2050203
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462441547859600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |