Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq31 282 3e-71 seq7014 86.0 4e-12 >seq31 Length=16788233 Score = 282 bits (312), Expect = 3e-71 Identities = 683/1025 (67%), Gaps = 18/1025 (2%) Strand=Plus/Plus Query 107544 CGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAG 107603 || |||||| |||| || ||| | ||||| | ||||||||| |||| ||| || Sbjct 14018204 CGCGGGGACGAGGAGGCGGTGCGGGACGCCCTGGTGAGCAACCTGGAGGTGAGGAACAAA 14018263 Query 107604 CGGTCGCCTCTCACTGGCACCTAT---TACCTCAACATAACCAGAGACTGTGAGCGCTTC 107660 || || || | || || | ||||| ||||| || | ||||| |||| Sbjct 14018264 AGGCAACCCCTGA---GCCCCGAGGAGTACCTGAACATGACGAAGGACTGCCGCAACTTC 14018320 Query 107661 AAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATT 107720 |||| | || | ||| ||||||| ||||| | || || |||||||||||| Sbjct 14018321 AAGGAGCGCCGGCGCTACATCGAGTTCCCGCTGAGCGAGGAGGAAGCCGACTTCCCCATT 14018380 Query 107721 GCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTG 107780 |||||||| ||||| |||| | ||||| || | || || ||||| ||||| | | Sbjct 14018381 GCCTACTCCATGGTCATCCACCACAAGATCGAGATGTTCGAGCGGCTCCTGCGCTCTCTC 14018440 Query 107781 TATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAA 107840 || || || |||||| | ||||| ||||||||||| | ||| | || | | ||| | Sbjct 14018441 TACGCGCCGCAGAACGTCTACTGCGTCCACGTGGACGGCAAGGCTCCCGCCGCCTTCCAG 14018500 Query 107841 GAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 |||| || ||||| ||||||||||||| |||||| ||||||| ||| Sbjct 14018501 CAGGCCGTGCGTGCCATCGCCGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAG 14018560 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 ||||| || |||||||||||| | |||| || ||||| ||||| ||| | ||| || Sbjct 14018561 AGCGTGGTGTACGCCTCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTG 14018620 Query 107961 CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020 || | |||| | ||||| ||| ||| | || | || ||||| || ||||||||||| Sbjct 14018621 CTGCGGAGCCCCGTGCCCTGGCGCTACATCCTCACCACGTGCGGCACCGACTTCCCCATC 14018680 Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080 |||||||| || ||||| |||| || || | || || |||| ||||||| |||||| Sbjct 14018681 AAGACCAACGCGGAGATTGTCCGCGCGCTGCGGGTGCTGCAGGGGCAGAACAGCATGGAG 14018740 Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGA- 108139 || ||| || | | | ||| | |||||||| |||| | |||| ||| Sbjct 14018741 TCGGAGAAGCCGACGGCCTACAAGCGGGAGCGCTGGAAGTACCAGCACCTCGTGA-AGAC 14018799 Query 108140 CACACTGTACCCTACCAGCAAGATGAAG-GACCCTC-CCCCTGATAATTTACCCATGTTC 108197 | | | | || || || | |||| || || || ||| | || |||||| Sbjct 14018800 CTCCATCTCCCGCACGGCCACGGAGAAGTCGCCGTCGCCGCTG--CCCTCGCCGATGTTC 14018857 Query 108198 ACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCT 108257 || || | ||||| | | |||| | || ||||| || | || || | || |||| Sbjct 14018858 ACGGGCAGCGCCTACATCGCGGCCACGCGGGCCTTCGTGCGGCACGTGCTGGAGGACCCC 14018917 Query 108258 AAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGG 108317 | | | | | || |||| ||| |||||||| ||||||||||| ||| | ||| Sbjct 14018918 GCGGCGCGGCGCTTCCTCGATTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTGTGG 14018977 Query 108318 GCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCAC 108377 ||||| || | || || || | |||| ||| | || || | | ||||| || Sbjct 14018978 GCCACGCTGAACCGCGCGCCCGGCGTGCCCGGCGCCGTGCCGTACAGCGACAAGTTCCAG 14019037 Query 108378 ATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTC 108437 | || ||||||| || | || | || |||||||||||||||| || ||||| Sbjct 14019038 ACGTCCGACATGAACGCGCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGACGGAGACACG 14019097 Query 108438 AGCATGGGGGCGCCTTATGCACCCTGCTCTG---GAATCCATCGGAGGGCCATCTGCATT 108494 ||| || ||||| || | |||||| | | | |||| || || | ||||| | Sbjct 14019098 AGCCGCGGAGCGCCCTACCCGCCCTGCACCGGCCGCTTCCAGCGCAG---CGTCTGCGTC 14019154 Query 108495 TACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTT 108554 ||||||||||||||| || |||||| || | | | | || ||| |||| |||||||| Sbjct 14019155 TACGGGGCCGGGGACGTGGCCTGGATGCTGCGGCAGCGCCAACTCCTGGCCAACAAGTTC 14019214 Query 108555 GACCC 108559 ||||| Sbjct 14019215 GACCC 14019219 >seq7014 Length=15999421 Score = 86.0 bits (94), Expect = 4e-12 Identities = 191/284 (67%), Gaps = 2/284 (1%) Strand=Plus/Minus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| || || || || || || | ||||| || ||||| | Sbjct 6553427 TTGAGTGGGCAAAAGACACTTACAGTCCTGATGAGTACTTATGGGCAACGATTCAGAGAA 6553368 Query 108334 -CTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392 | ||| | | || ||| ||||| || | |||||| || | || || |||| | Sbjct 6553367 TCCCCGACG-TCCCAGGCGCTGTTTCTTCTAATGAGAAGTATGACGTTTCTGATATGAAT 6553309 Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452 || | || ||| | ||||||||||||||| ||| |||||||| | || || || Sbjct 6553308 GCACTGGCTAGGTTTGTCAAGTGGCAGTACTTCGAAGGAGATGTGTCTAAAGGTGCACCC 6553249 Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512 || |||| ||| |||| | ||| | | |||| | | || | || |||||| Sbjct 6553248 TACCCACCGTGCAGTGGAGTTCATGTTCGCTCTGTCTGTGTGTTTGGTGTAGGAGACCTG 6553189 Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||||||| || | ||||| ||| |||| || || |||||||| Sbjct 6553188 AACTGGATGCTGCGAAACCACCACTTCTTTGCTAATAAGTTTGA 6553145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348217076206164