Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq31 282 3e-71
seq7014 86.0 4e-12
>seq31
Length=16788233
Score = 282 bits (312), Expect = 3e-71
Identities = 683/1025 (67%), Gaps = 18/1025 (2%)
Strand=Plus/Plus
Query 107544 CGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAG 107603
|| |||||| |||| || ||| | ||||| | ||||||||| |||| ||| ||
Sbjct 14018204 CGCGGGGACGAGGAGGCGGTGCGGGACGCCCTGGTGAGCAACCTGGAGGTGAGGAACAAA 14018263
Query 107604 CGGTCGCCTCTCACTGGCACCTAT---TACCTCAACATAACCAGAGACTGTGAGCGCTTC 107660
|| || || | || || | ||||| ||||| || | ||||| ||||
Sbjct 14018264 AGGCAACCCCTGA---GCCCCGAGGAGTACCTGAACATGACGAAGGACTGCCGCAACTTC 14018320
Query 107661 AAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATT 107720
|||| | || | ||| ||||||| ||||| | || || ||||||||||||
Sbjct 14018321 AAGGAGCGCCGGCGCTACATCGAGTTCCCGCTGAGCGAGGAGGAAGCCGACTTCCCCATT 14018380
Query 107721 GCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTG 107780
|||||||| ||||| |||| | ||||| || | || || ||||| ||||| | |
Sbjct 14018381 GCCTACTCCATGGTCATCCACCACAAGATCGAGATGTTCGAGCGGCTCCTGCGCTCTCTC 14018440
Query 107781 TATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAA 107840
|| || || |||||| | ||||| ||||||||||| | ||| | || | | ||| |
Sbjct 14018441 TACGCGCCGCAGAACGTCTACTGCGTCCACGTGGACGGCAAGGCTCCCGCCGCCTTCCAG 14018500
Query 107841 GAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900
|||| || ||||| ||||||||||||| |||||| ||||||| |||
Sbjct 14018501 CAGGCCGTGCGTGCCATCGCCGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAG 14018560
Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960
||||| || |||||||||||| | |||| || ||||| ||||| ||| | ||| ||
Sbjct 14018561 AGCGTGGTGTACGCCTCCTGGTCCCGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTG 14018620
Query 107961 CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATA 108020
|| | |||| | ||||| ||| ||| | || | || ||||| || |||||||||||
Sbjct 14018621 CTGCGGAGCCCCGTGCCCTGGCGCTACATCCTCACCACGTGCGGCACCGACTTCCCCATC 14018680
Query 108021 AAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAG 108080
|||||||| || ||||| |||| || || | || || |||| ||||||| ||||||
Sbjct 14018681 AAGACCAACGCGGAGATTGTCCGCGCGCTGCGGGTGCTGCAGGGGCAGAACAGCATGGAG 14018740
Query 108081 TCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGA- 108139
|| ||| || | | | ||| | |||||||| |||| | |||| |||
Sbjct 14018741 TCGGAGAAGCCGACGGCCTACAAGCGGGAGCGCTGGAAGTACCAGCACCTCGTGA-AGAC 14018799
Query 108140 CACACTGTACCCTACCAGCAAGATGAAG-GACCCTC-CCCCTGATAATTTACCCATGTTC 108197
| | | | || || || | |||| || || || ||| | || ||||||
Sbjct 14018800 CTCCATCTCCCGCACGGCCACGGAGAAGTCGCCGTCGCCGCTG--CCCTCGCCGATGTTC 14018857
Query 108198 ACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCT 108257
|| || | ||||| | | |||| | || ||||| || | || || | || ||||
Sbjct 14018858 ACGGGCAGCGCCTACATCGCGGCCACGCGGGCCTTCGTGCGGCACGTGCTGGAGGACCCC 14018917
Query 108258 AAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGG 108317
| | | | | || |||| ||| |||||||| ||||||||||| ||| | |||
Sbjct 14018918 GCGGCGCGGCGCTTCCTCGATTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTGTGG 14018977
Query 108318 GCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCAC 108377
||||| || | || || || | |||| ||| | || || | | ||||| ||
Sbjct 14018978 GCCACGCTGAACCGCGCGCCCGGCGTGCCCGGCGCCGTGCCGTACAGCGACAAGTTCCAG 14019037
Query 108378 ATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTC 108437
| || ||||||| || | || | || |||||||||||||||| || |||||
Sbjct 14019038 ACGTCCGACATGAACGCGCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGACGGAGACACG 14019097
Query 108438 AGCATGGGGGCGCCTTATGCACCCTGCTCTG---GAATCCATCGGAGGGCCATCTGCATT 108494
||| || ||||| || | |||||| | | | |||| || || | ||||| |
Sbjct 14019098 AGCCGCGGAGCGCCCTACCCGCCCTGCACCGGCCGCTTCCAGCGCAG---CGTCTGCGTC 14019154
Query 108495 TACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTT 108554
||||||||||||||| || |||||| || | | | | || ||| |||| ||||||||
Sbjct 14019155 TACGGGGCCGGGGACGTGGCCTGGATGCTGCGGCAGCGCCAACTCCTGGCCAACAAGTTC 14019214
Query 108555 GACCC 108559
|||||
Sbjct 14019215 GACCC 14019219
>seq7014
Length=15999421
Score = 86.0 bits (94), Expect = 4e-12
Identities = 191/284 (67%), Gaps = 2/284 (1%)
Strand=Plus/Minus
Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333
|||| |||| |||||||| || || || || || || | ||||| || ||||| |
Sbjct 6553427 TTGAGTGGGCAAAAGACACTTACAGTCCTGATGAGTACTTATGGGCAACGATTCAGAGAA 6553368
Query 108334 -CTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACT 108392
| ||| | | || ||| ||||| || | |||||| || | || || |||| |
Sbjct 6553367 TCCCCGACG-TCCCAGGCGCTGTTTCTTCTAATGAGAAGTATGACGTTTCTGATATGAAT 6553309
Query 108393 GCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCT 108452
|| | || ||| | ||||||||||||||| ||| |||||||| | || || ||
Sbjct 6553308 GCACTGGCTAGGTTTGTCAAGTGGCAGTACTTCGAAGGAGATGTGTCTAAAGGTGCACCC 6553249
Query 108453 TATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTG 108512
|| |||| ||| |||| | ||| | | |||| | | || | || ||||||
Sbjct 6553248 TACCCACCGTGCAGTGGAGTTCATGTTCGCTCTGTCTGTGTGTTTGGTGTAGGAGACCTG 6553189
Query 108513 TACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556
||||||| || | ||||| ||| |||| || || ||||||||
Sbjct 6553188 AACTGGATGCTGCGAAACCACCACTTCTTTGCTAATAAGTTTGA 6553145
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348217076206164
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |