Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 >seq1 Length=54145758 Score = 109 bits (120), Expect = 4e-19 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | || | ||||| ||||| || || ||| || ||||| || || ||| || Sbjct 34290661 AGATATTTCTCTGATGGCCTTGCCACCTTGCCATGCTCTTTGCCAGTTCTATGTTCTAAA 34290720 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | ||| |||| |||||| ||||||| | || | ||||||||||| || || ||||| Sbjct 34290721 TGGCGAACTGTCTTGTCAACTGTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTT 34290780 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||||||||| || ||| | ||||| || || ||||| || ||||| |||| Sbjct 34290781 CAATATTGCCAGCTATTCACTGCTCACATACATGATAGCCCATGTCACAG 34290830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399124714439770