Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq89 127 2e-24
seq114 102 6e-17
>seq89
Length=7284382
Score = 127 bits (140), Expect = 2e-24
Identities = 154/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| |||||| ||| ||||||||| ||||||||||| ||| ||| |||| |||
Sbjct 2822215 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTCTTCC 2822274
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || ||||| |||| || ||| || ||||| || | ||||||||||||
Sbjct 2822275 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 2822334
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||| ||||||| || || |||||
Sbjct 2822335 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGTCTCAACCTCCAGAGTGATGGTCTTA 2822394
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||||| |||||||||||||| ||||||
Sbjct 2822395 CCCGTCAAGGTCTTCACAAAGATCTGCATG 2822424
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||| |||| | | |||| |||||| ||| ||||||||| ||||||||||| |
Sbjct 2821969 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822028
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| |||| ||||| || || || || || |||| || ||| || || || ||
Sbjct 2822029 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 2822088
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289
| |||||||||||| || || ||| || | | | | |||| | ||||||
Sbjct 2822089 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACC 2822148
Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| ||| || |||||||| ||||| |||||||| ||||| |||||
Sbjct 2822149 TCCAAGGTTATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822195
Score = 109 bits (120), Expect = 4e-19
Identities = 152/212 (72%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| || || ||| ||||||||| ||||||||||| ||| ||| | || ||||
Sbjct 2822444 CAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCA 2822503
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || || || || || |||| || ||| || || || || | |||||||||||| |
Sbjct 2822504 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGA 2822563
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || ||| || | | | | |||| | |||||||||| ||| || || ||||
Sbjct 2822564 TCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCCAAGGTGATGGTTTTGC 2822623
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
| ||||| |||||||| ||||| |||||||||
Sbjct 2822624 CAGTCAGGGTCTTCACGAAGATCTGCATGTTG 2822655
>seq114
Length=3819349
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||||| ||| ||||||||| ||||||||||| ||| ||| | || |||
Sbjct 3316235 ACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3316294
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || |||| || ||| || |||||||| | || || |||||
Sbjct 3316295 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGG 3316354
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | || ||||| | ||| || ||||||
Sbjct 3316355 ATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTG 3316414
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| |||||||||||||| |||||
Sbjct 3316415 CCAGTCAGGGTCTTCACAAAGATCTGCAT 3316443
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395016524665906
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |