Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq84 122 8e-23 seq114 86.0 6e-12 seq89 86.0 6e-12 >seq84 Length=273125 Score = 122 bits (134), Expect = 8e-23 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 ||||||||||||| || ||||| || ||||| || || || ||||| || || || || Sbjct 176902 CACCTCGTCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGT 176961 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| || ||| |||||||| | ||||| || || ||||| |||||||| ||||| Sbjct 176962 CCCCAAGTTCTGCTGATTGCTTTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGT 177021 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196 ||| ||||| ||||||||||||||| || Sbjct 177022 GCCAGTCTCTGTCTGCGACTCGATGATGGC 177051 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || |||||||| ||||| || || |||| || || | ||| ||| ||| |||| Sbjct 178201 TCATGAAGAGATCCGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGCTCTTCTT 178260 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 | || |||||||| || || || | ||| || || | |||| ||||||||||| | || Sbjct 178261 TCCCAGTGTTCTTCTTTAAGTCAAGAAACTCGAAGATGTCCAGGTGCCACGGCTCCAAGT 178320 Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495 | | |||||| || || ||||||| Sbjct 178321 AGATGGCAAAAGCCCCAGGTCTCT 178344 >seq114 Length=3819349 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || |||| ||||| || |||||| | || |||||||| Sbjct 3316215 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 3316156 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| || || | || ||||| |||||| | || || || ||| Sbjct 3316155 GACACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGATCAG 3316096 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| |||||||| || || || || ||| Sbjct 3316095 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 3316036 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || || |||||||| || | || ||||| || Sbjct 3316035 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTCAGGGGTGG 3315989 >seq89 Length=7284382 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA-ACC-G 31249 |||||| || || || ||||| |||| || || || ||||| | || ||||| ||| | Sbjct 2822424 CATGCAGATCTTTGTGAAGACCTTGACGGGTAAGACCATCACTCTGGAGGTTGAGACCAG 2822365 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 | |||| | || | || || | || ||||||||| ||| | || ||||| Sbjct 2822364 T--GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGAT 2822307 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||| | || || ||||||||||| ||| |||||||| ||| || || || Sbjct 2822306 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACTCTGTCTGACTAC 2822247 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || || || ||||| || | |||||||| || Sbjct 2822246 AACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 2822197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445698498633120