Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq84 122 8e-23
seq114 86.0 6e-12
seq89 86.0 6e-12
>seq84
Length=273125
Score = 122 bits (134), Expect = 8e-23
Identities = 117/150 (78%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106
||||||||||||| || ||||| || ||||| || || || ||||| || || || ||
Sbjct 176902 CACCTCGTCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGT 176961
Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166
||||| || ||| |||||||| | ||||| || || ||||| |||||||| |||||
Sbjct 176962 CCCCAAGTTCTGCTGATTGCTTTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGT 177021
Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGC 23196
||| ||||| ||||||||||||||| ||
Sbjct 177022 GCCAGTCTCTGTCTGCGACTCGATGATGGC 177051
Score = 98.7 bits (108), Expect = 9e-16
Identities = 108/144 (75%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411
|||| || |||||||| ||||| || || |||| || || | ||| ||| ||| ||||
Sbjct 178201 TCATGAAGAGATCCGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGCTCTTCTT 178260
Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471
| || |||||||| || || || | ||| || || | |||| ||||||||||| | ||
Sbjct 178261 TCCCAGTGTTCTTCTTTAAGTCAAGAAACTCGAAGATGTCCAGGTGCCACGGCTCCAAGT 178320
Query 23472 AAACGGCAAACGCGCCCGGTCTCT 23495
| | |||||| || || |||||||
Sbjct 178321 AGATGGCAAAAGCCCCAGGTCTCT 178344
>seq114
Length=3819349
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || || || |||| ||||| || |||||| | || ||||||||
Sbjct 3316215 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 3316156
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | |||| || || | || ||||| |||||| | || || || |||
Sbjct 3316155 GACACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGATCAG 3316096
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || ||||||||||| ||| |||||||| || || || || |||
Sbjct 3316095 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 3316036
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || || || || || || |||||||| || | || ||||| ||
Sbjct 3316035 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTCAGGGGTGG 3315989
>seq89
Length=7284382
Score = 86.0 bits (94), Expect = 6e-12
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA-ACC-G 31249
|||||| || || || ||||| |||| || || || ||||| | || ||||| ||| |
Sbjct 2822424 CATGCAGATCTTTGTGAAGACCTTGACGGGTAAGACCATCACTCTGGAGGTTGAGACCAG 2822365
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
| |||| | || | || || | || ||||||||| ||| | || |||||
Sbjct 2822364 T--GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGAT 2822307
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369
|||||| | || || ||||||||||| ||| |||||||| ||| || || ||
Sbjct 2822306 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACTCTGTCTGACTAC 2822247
Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||| || || || || || || || ||||| || | |||||||| ||
Sbjct 2822246 AACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 2822197
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445698498633120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |