Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1 129 7e-25
seq2 111 2e-19
>seq1
Length=54145758
Score = 129 bits (142), Expect = 7e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| ||||| ||||| | ||| || ||||| || | ||| ||||||||||| | ||| |
Sbjct 8045433 CCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTCT 8045374
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| ||||||||||| | ||| ||||| || ||||||||||| ||||| |||||||||||||
Sbjct 8045373 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 8045314
Query 33724 CAATAAGTCTCTCTCC 33739
||| | ||||| ||
Sbjct 8045313 CAACCACCCTCTCACC 8045298
>seq2
Length=38276455
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663
|||| |||||||| || | || |||||||| |||||||| ||||||| ||| | || |
Sbjct 2050875 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 2050934
Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723
| |||||||| || || || || || || ||||||||||||||||| ||||| ||||| |
Sbjct 2050935 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 2050994
Query 33724 C 33724
|
Sbjct 2050995 C 2050995
Score = 86.0 bits (94), Expect = 8e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335
||||| |||||||| | || |||||||| || || || || || ||||| || || |||
Sbjct 2049590 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 2049649
Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33370
|||| || || ||||||||||||||||| |||||
Sbjct 2049650 TCCAGAGAGATGTTTTCCATGAAATCAAAAGGATT 2049684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629721663034080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |