Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq2 134 1e-26
seq1 107 2e-18
>seq2
Length=38276455
Score = 134 bits (148), Expect = 1e-26
Identities = 110/134 (82%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| |||||||| || || ||||||||||| || | ||| ||||| || |||| ||| ||
Sbjct 2050877 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 2050936
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| |||||| || | ||||| || ||||||||||| ||||| ||||| ||||||||||||
Sbjct 2050937 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 2050996
Query 11774 ACTACTCTTTCTCC 11787
||||||| ||||||
Sbjct 2050997 ACTACTCGTTCTCC 2051010
Score = 82.4 bits (90), Expect = 7e-11
Identities = 78/100 (78%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 11882 TCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTT 11941
||| || |||| | | || || || |||| | ||| |||||||||||||| ||||||
Sbjct 2052491 TCTCTAGAATCTTTGATGTACGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTT 2052550
Query 11942 TCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981
||||| || || || || ||||||||||| ||||| ||||
Sbjct 2052551 TCCATGGCAATCTGGAAGCCATAGAAACAACGTGCTTCTG 2052590
>seq1
Length=54145758
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| ||||| || || |||||||| ||||| || ||||| ||||| | || | || ||
Sbjct 8045431 TCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTCTTC 8045372
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| |||||||||||||||||||||||| |||||||| || || || || || ||||| ||
Sbjct 8045371 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 8045312
Query 11774 ACTACTCTTTCTCC 11787
|| || || || ||
Sbjct 8045311 ACCACCCTCTCACC 8045298
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468453431959840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |