Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 seq21 122 1e-22 seq2 111 2e-19 >seq1 Length=54145758 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| |||||||| || | ||| ||||||||||| | ||| | Sbjct 8045433 CCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTCT 8045374 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | |||||||| || |||||||| || ||||| ||||| ||||||| Sbjct 8045373 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 8045314 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | ||||| || Sbjct 8045313 CAACCACCCTCTCACC 8045298 >seq21 Length=11988284 Score = 122 bits (134), Expect = 1e-22 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAA-AAGCTGTAACAGATGCAAGAACAGATTGATGATAT 9285 ||| || |||||| || | ||||| |||| ||| ||| | | ||||||||||||||| | Sbjct 8929184 TTACTTTTTATTAAATGCCTCCAATAAGC-GTAGCAGGTTGAGGAACAGATTGATGATGT 8929126 Query 9286 CCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTG 9345 ||| ||| | ||||| | || | | || |||||||| || | ||| || || || Sbjct 8929125 CCAGGTAAAGGTTGATTGCAGCCAGTATGTATTCTTCAGGGGATAACTTGTGCATCAGCA 8929066 Query 9346 AGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCA 9405 |||| || ||||| ||||| ||||| ||||| | ||| || ||| |||||| | |||| Sbjct 8929065 AGTGAGTATCATAAATAATAAATCCACAGAAGAGAAGTGCTCCAGAAGCAGCAAACACCA 8929006 Query 9406 GCTCCACTGTTTCACTTTG 9424 |||||| | ||||||| || Sbjct 8929005 GCTCCATTATTTCACTATG 8928987 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||| ||||||||||| || | || || ||||||| ||||| Sbjct 8927542 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTGTACACAGTCAGCCCAAGA 8927483 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || ||||| || || ||||| ||||||| |||| ||| ||||||||| Sbjct 8927482 AATACAGCAGTCGTAAGAATGAAGGCTTGCAAGACGATGGACACGTCATAGAAA 8927429 >seq2 Length=38276455 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | || || ||||| |||||||| ||||||| ||| | || | Sbjct 2050875 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 2050934 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 2050935 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 2050994 Query 36300 C 36300 | Sbjct 2050995 C 2050995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658072543828240