Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq1 123 3e-23
seq21 122 1e-22
seq2 111 2e-19
>seq1
Length=54145758
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| |||||||| || | ||| ||||||||||| | ||| |
Sbjct 8045433 CCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTCT 8045374
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| | |||||||| || |||||||| || ||||| ||||| |||||||
Sbjct 8045373 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 8045314
Query 36300 CAATAAGTCTCTCTCC 36315
||| | ||||| ||
Sbjct 8045313 CAACCACCCTCTCACC 8045298
>seq21
Length=11988284
Score = 122 bits (134), Expect = 1e-22
Identities = 148/199 (74%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 9227 TTATTTCTTATTAGATACTTCCAA-AAGCTGTAACAGATGCAAGAACAGATTGATGATAT 9285
||| || |||||| || | ||||| |||| ||| ||| | | ||||||||||||||| |
Sbjct 8929184 TTACTTTTTATTAAATGCCTCCAATAAGC-GTAGCAGGTTGAGGAACAGATTGATGATGT 8929126
Query 9286 CCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTG 9345
||| ||| | ||||| | || | | || |||||||| || | ||| || || ||
Sbjct 8929125 CCAGGTAAAGGTTGATTGCAGCCAGTATGTATTCTTCAGGGGATAACTTGTGCATCAGCA 8929066
Query 9346 AGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCA 9405
|||| || ||||| ||||| ||||| ||||| | ||| || ||| |||||| | ||||
Sbjct 8929065 AGTGAGTATCATAAATAATAAATCCACAGAAGAGAAGTGCTCCAGAAGCAGCAAACACCA 8929006
Query 9406 GCTCCACTGTTTCACTTTG 9424
|||||| | ||||||| ||
Sbjct 8929005 GCTCCATTATTTCACTATG 8928987
Score = 93.3 bits (102), Expect = 6e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| ||||| ||||||||||| || | || || ||||||| |||||
Sbjct 8927542 CCTGCTCCAAATTTGCTGAAGTCTCTCTTTGACTGCAAGGTGTACACAGTCAGCCCAAGA 8927483
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593
|| || ||||| || || ||||| ||||||| |||| ||| |||||||||
Sbjct 8927482 AATACAGCAGTCGTAAGAATGAAGGCTTGCAAGACGATGGACACGTCATAGAAA 8927429
>seq2
Length=38276455
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| |||||||| || | || || ||||| |||||||| ||||||| ||| | || |
Sbjct 2050875 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 2050934
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| |
Sbjct 2050935 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 2050994
Query 36300 C 36300
|
Sbjct 2050995 C 2050995
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658072543828240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |