Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq114 100 2e-16
>seq114
Length=3819349
Score = 100 bits (110), Expect = 2e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||| |||||||| || || || |||||||| || || | | | ||||||| | ||
Sbjct 3316012 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 3316071
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
||||||||| | |||| | || || || ||||| ||||||||||| || ||
Sbjct 3316072 CTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTGTCTTGGATCTT 3316131
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
| ||| ||| |||| ||||| || || ||| || || | ||| ||||| || || ||
Sbjct 3316132 GGCCTTCACATTTTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGT 3316191
Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364
|| ||||| ||||| || ||||||
Sbjct 3316192 CAAGGTTTTCACAAAGATCTGCATA 3316216
Score = 86.0 bits (94), Expect = 5e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219
||| |||||||| || || || |||||||| || || | | | | ||||| | ||
Sbjct 3316240 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 3316299
Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279
|||||||| | |||| | || || ||| ||||| ||||||||||| || ||
Sbjct 3316300 CTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTT 3316359
Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
| ||| || | || ||||| || || ||| || || | ||| ||||| || || ||
Sbjct 3316360 GGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGT 3316419
Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364
||| || || ||||| || ||||||
Sbjct 3316420 CAGGGTCTTCACAAAGATCTGCATA 3316444
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362125410277026
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |