Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq114 84.2 1e-11
>seq114
Length=3819349
Score = 84.2 bits (92), Expect = 1e-11
Identities = 150/218 (69%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214
|||| ||||| ||||| || ||||| || || || ||||| ||||||| || | |
Sbjct 3316001 CGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 3316060
Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273
|| |||| ||||| ||| || || | | ||||| || | ||| |||||||||||
Sbjct 3316061 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTG 3316120
Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331
|| | | | ||| || || ||| ||| ||||| |||||| ||| || || ||
Sbjct 3316121 TCTTGGATCTTGGCC---TTCACATTTTCAATGGTGTCACTGGGTTCAACCTCAAGGGTG 3316177
Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || || || | ||||| || || || |||||
Sbjct 3316178 ATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318730256147028
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |