Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq2 102 7e-17 >seq1 Length=54145758 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 13161 CACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAA 13220 |||| | || | | |||||||| || || || || || ||||| || | || ||||| | Sbjct 8045445 CACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTA 8045386 Query 13221 GCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAA 13280 | || | || || | |||||||||||||||||| ||||||||||| || || ||||||| Sbjct 8045385 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 8045326 Query 13281 CTGCTGCAAACGCTATCAACCTTTCACC 13308 |||| ||||| || | || ||| ||||| Sbjct 8045325 CTGCAGCAAAGGCAACCACCCTCTCACC 8045298 >seq2 Length=38276455 Score = 102 bits (112), Expect = 7e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || ||||| || ||||| || || || ||||| | |||| ||| || Sbjct 2050877 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 2050936 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| || || ||||| || |||||||| ||||||||||| ||| Sbjct 2050937 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 2050996 Query 13295 A 13295 | Sbjct 2050997 A 2050997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430918391840772